Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5CHR_RS29085 Genome accession   NZ_LR594675
Coordinates   6113880..6114947 (+) Length   355 a.a.
NCBI ID   WP_162583235.1    Uniprot ID   A0A6P2FQI8
Organism   Variovorax sp. PBS-H4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6108880..6119947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5CHR_RS29070 (H4CHR_05807) - 6111043..6112491 (-) 1449 WP_162583232.1 sensor histidine kinase N-terminal domain-containing protein -
  E5CHR_RS29075 (H4CHR_05808) - 6112517..6113188 (-) 672 WP_162583233.1 response regulator transcription factor -
  E5CHR_RS29080 (H4CHR_05809) - 6113246..6113731 (-) 486 WP_162583234.1 MarR family transcriptional regulator -
  E5CHR_RS29085 (H4CHR_05810) recA 6113880..6114947 (+) 1068 WP_162583235.1 recombinase RecA Machinery gene
  E5CHR_RS29090 (H4CHR_05811) recX 6114957..6115406 (+) 450 WP_162583236.1 recombination regulator RecX -
  E5CHR_RS29095 (H4CHR_05812) argC 6115417..6116346 (-) 930 WP_162583237.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  E5CHR_RS29100 (H4CHR_05813) sucC 6116541..6117707 (+) 1167 WP_162583238.1 ADP-forming succinate--CoA ligase subunit beta -
  E5CHR_RS29105 (H4CHR_05814) sucD 6117717..6118610 (+) 894 WP_162583239.1 succinate--CoA ligase subunit alpha -
  E5CHR_RS29110 (H4CHR_05815) - 6118700..6119383 (+) 684 WP_162583240.1 TerC family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37778.38 Da        Isoelectric Point: 5.0512

>NTDB_id=1128256 E5CHR_RS29085 WP_162583235.1 6113880..6114947(+) (recA) [Variovorax sp. PBS-H4]
MDALVKGSSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPTLSREIENKVRESLGIPLLPEDAGEGTTGA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1128256 E5CHR_RS29085 WP_162583235.1 6113880..6114947(+) (recA) [Variovorax sp. PBS-H4]
ATGGACGCACTCGTCAAAGGCAGCAGCATCTCGGTCGCAGGCAGCGAAAAAGCCAAGGCCCTTCAGGCCGCCCTGGCCCA
GATTGAAAAGCAGTTCGGCAAGGGCACCATCATGCGGCTGGGCGAAGGCGAGGCGCTGGAGGACATCCAGGTGGTCTCCA
CCGGCTCGTTGGGCCTGGACATCGCACTGGGCGTCGGCGGCCTCCCGCGTGGCCGCGTGATCGAGATCTACGGGCCGGAA
TCCTCGGGTAAGACCACGCTCACGCTGCAGGTCATCGCCCAGATGCAGAAACAAGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCACGCGCTGGACGTTCAGTACGCGCAGAAGCTGGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCTCTGGAGATCGTCGATTCGCTGGTGCGCTCGGGAGCGGTCGACCTGATCGTCGTCGACTCGGTGGCCGCG
CTCACGCCCAAGGCTGAAATCGAGGGCGAAATGGGCGATTCGCTGCCCGGACTGCAGGCGCGTCTCATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCACCCGAGACCACCACCGGCGGAAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATTCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCGATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCGCCCTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAAATCATCGACATGGGCGTGACCGCCA
AGATCGTTGACAAATCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGGCAAGGCCGGGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCGACGCTTTCGCGAGAAATCGAAAACAAGGTACGCGAATCGCTAGGTATTCCGCTCTTGCCCGAGGA
CGCGGGCGAAGGCACAACCGGGGCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P2FQI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.439

88.451

0.738
  recA Acinetobacter baylyi ADP1

73.065

90.986

0.665
  recA Neisseria gonorrhoeae MS11

71.646

92.394

0.662
  recA Neisseria gonorrhoeae MS11

71.646

92.394

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.646

92.394

0.662
  recA Pseudomonas stutzeri DSM 10701

72.755

90.986

0.662
  recA Acinetobacter baumannii D1279779

72.446

90.986

0.659
  recA Glaesserella parasuis strain SC1401

71.037

92.394

0.656
  recA Vibrio cholerae strain A1552

69.789

93.239

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.789

93.239

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

91.831

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

92.676

0.614
  recA Helicobacter pylori 26695

65.951

91.831

0.606
  recA Helicobacter pylori strain NCTC11637

65.951

91.831

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.113

0.6
  recA Streptococcus mutans UA159

61.29

96.056

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

61.905

94.648

0.586
  recA Streptococcus pyogenes NZ131

62.236

93.239

0.58
  recA Streptococcus pneumoniae Rx1

61.446

93.521

0.575
  recA Streptococcus pneumoniae D39

61.446

93.521

0.575
  recA Streptococcus pneumoniae R6

61.446

93.521

0.575
  recA Streptococcus pneumoniae TIGR4

61.446

93.521

0.575
  recA Lactococcus lactis subsp. cremoris KW2

61.145

93.521

0.572
  recA Streptococcus mitis SK321

61.145

93.521

0.572
  recA Streptococcus mitis NCTC 12261

61.145

93.521

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.423

0.555

Multiple sequence alignment