Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WDLP6_RS26875 Genome accession   NZ_LR594671
Coordinates   5537648..5538739 (-) Length   363 a.a.
NCBI ID   WP_162594833.1    Uniprot ID   A0A6P2FMV3
Organism   Variovorax sp. PBL-E5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5532648..5543739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDLP6_RS26850 (E5CHR_05363) - 5533085..5533771 (-) 687 WP_162570182.1 TerC family protein -
  WDLP6_RS26855 (E5CHR_05364) sucD 5533867..5534760 (-) 894 WP_162570183.1 succinate--CoA ligase subunit alpha -
  WDLP6_RS26860 (E5CHR_05365) sucC 5534771..5535934 (-) 1164 WP_162594830.1 ADP-forming succinate--CoA ligase subunit beta -
  WDLP6_RS26865 (E5CHR_05366) argC 5536119..5537042 (+) 924 WP_162594831.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  WDLP6_RS26870 (E5CHR_05367) recX 5537189..5537638 (-) 450 WP_162594832.1 recombination regulator RecX -
  WDLP6_RS26875 (E5CHR_05368) recA 5537648..5538739 (-) 1092 WP_162594833.1 recombinase RecA Machinery gene
  WDLP6_RS26880 (E5CHR_05369) - 5538885..5539370 (+) 486 WP_162570188.1 MarR family transcriptional regulator -
  WDLP6_RS26885 (E5CHR_05370) - 5539431..5540102 (+) 672 WP_162570189.1 response regulator transcription factor -
  WDLP6_RS26890 (E5CHR_05371) - 5540099..5541562 (+) 1464 WP_162594834.1 sensor histidine kinase -
  WDLP6_RS26895 (E5CHR_05372) - 5541559..5541771 (-) 213 WP_162594835.1 sporulation protein -
  WDLP6_RS26900 (E5CHR_05373) - 5541774..5542571 (-) 798 WP_162594836.1 biotin--[acetyl-CoA-carboxylase] ligase -
  WDLP6_RS26905 (E5CHR_05374) - 5542574..5543149 (-) 576 WP_162594837.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38821.52 Da        Isoelectric Point: 5.0922

>NTDB_id=1128238 WDLP6_RS26875 WP_162594833.1 5537648..5538739(-) (recA) [Variovorax sp. PBL-E5]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQRQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPSLSREIENKVRESLGIPLLAEAADGTADKPEKSEKSEK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1128238 WDLP6_RS26875 WP_162594833.1 5537648..5538739(-) (recA) [Variovorax sp. PBL-E5]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGCGAAAAGGCCAAGGCCCTCCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTGGGCGAGGGCGAGGCGCTGGAAGACATCCAGGTGGTTTCCA
CCGGCTCCCTGGGCCTTGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAGATCTACGGACCGGAA
TCCTCGGGCAAGACCACCCTCACGCTGCAGGTCATCGCCGAGATGCAGCGCCAGGCCGGTACCTGTGCCTTCGTCGATGC
CGAACACGCGCTCGACGTGCAGTACGCGCAGAAGCTCGGCGTCAACCTGTCCGACCTGCTCATCAGCCAGCCCGACACGG
GCGAGCAGGCCCTCGAGATCGTCGATTCGCTGGTGCGCTCCGGCGCGGTCGACCTGATCGTGATCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCGCCCTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCGTCGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCGCTGCTGGCCGAAGC
GGCCGACGGCACTGCGGACAAGCCCGAGAAATCCGAGAAATCAGAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P2FMV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.44

92.562

0.763
  recA Acinetobacter baylyi ADP1

68.768

96.143

0.661
  recA Glaesserella parasuis strain SC1401

66.952

96.694

0.647
  recA Pseudomonas stutzeri DSM 10701

72.086

89.807

0.647
  recA Neisseria gonorrhoeae MS11

68.513

94.49

0.647
  recA Neisseria gonorrhoeae MS11

68.513

94.49

0.647
  recA Neisseria gonorrhoeae strain FA1090

68.513

94.49

0.647
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.733

94.766

0.642
  recA Vibrio cholerae strain A1552

67.733

94.766

0.642
  recA Acinetobacter baumannii D1279779

70.859

89.807

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.477

90.634

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

91.185

0.601
  recA Helicobacter pylori 26695

65.244

90.358

0.59
  recA Helicobacter pylori strain NCTC11637

65.244

90.358

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

90.083

0.587
  recA Streptococcus mutans UA159

59.599

96.143

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

92.287

0.567
  recA Streptococcus pneumoniae Rx1

57.79

97.245

0.562
  recA Streptococcus pneumoniae D39

57.79

97.245

0.562
  recA Streptococcus pneumoniae R6

57.79

97.245

0.562
  recA Streptococcus pneumoniae TIGR4

57.79

97.245

0.562
  recA Streptococcus mitis SK321

59.012

94.766

0.559
  recA Streptococcus pyogenes NZ131

61.398

90.634

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.027

91.185

0.556
  recA Streptococcus mitis NCTC 12261

60.121

91.185

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.43

0.534

Multiple sequence alignment