Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5P2_RS27160 Genome accession   NZ_LR594666
Coordinates   5640188..5641270 (-) Length   360 a.a.
NCBI ID   WP_162570187.1    Uniprot ID   -
Organism   Variovorax sp. SRS16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5635188..5646270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5P2_RS27135 (G3W92_RS27115) - 5635653..5636339 (-) 687 WP_162570182.1 TerC family protein -
  E5P2_RS27140 (G3W92_RS27120) sucD 5636435..5637328 (-) 894 WP_162570183.1 succinate--CoA ligase subunit alpha -
  E5P2_RS27145 (G3W92_RS27125) sucC 5637339..5638502 (-) 1164 WP_162570184.1 ADP-forming succinate--CoA ligase subunit beta -
  E5P2_RS27150 (G3W92_RS27130) argC 5638687..5639610 (+) 924 WP_162570185.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  E5P2_RS27155 (G3W92_RS27135) recX 5639729..5640178 (-) 450 WP_162570186.1 recombination regulator RecX -
  E5P2_RS27160 (G3W92_RS27140) recA 5640188..5641270 (-) 1083 WP_162570187.1 recombinase RecA Machinery gene
  E5P2_RS27165 (G3W92_RS27145) - 5641416..5641901 (+) 486 WP_162570188.1 MarR family transcriptional regulator -
  E5P2_RS27170 (G3W92_RS27150) - 5641962..5642633 (+) 672 WP_162570189.1 response regulator transcription factor -
  E5P2_RS27175 (G3W92_RS27155) - 5642630..5644093 (+) 1464 WP_162570190.1 sensor histidine kinase -
  E5P2_RS27180 (G3W92_RS27160) - 5644090..5644302 (-) 213 WP_162570191.1 sporulation protein -
  E5P2_RS27185 (G3W92_RS27165) - 5644305..5645102 (-) 798 WP_162570192.1 biotin--[acetyl-CoA-carboxylase] ligase -
  E5P2_RS27190 (G3W92_RS27170) - 5645105..5645680 (-) 576 WP_162570193.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38431.13 Da        Isoelectric Point: 5.0813

>NTDB_id=1128217 E5P2_RS27160 WP_162570187.1 5640188..5641270(-) (recA) [Variovorax sp. SRS16]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQRQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPSLSREIENKVRESLGIPLLAEAADGAADKPEKAEK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1128217 E5P2_RS27160 WP_162570187.1 5640188..5641270(-) (recA) [Variovorax sp. SRS16]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGCGAAAAGGCCAAGGCCCTCCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTGGGCGAGGGCGAGGCGCTGGAAGACATCCAGGTGGTTTCCA
CCGGCTCCCTGGGCCTCGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAGATCTACGGACCGGAA
TCCTCGGGCAAGACCACCCTCACGCTGCAGGTCATCGCCGAGATGCAGCGCCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAACACGCGCTCGACGTGCAGTACGCGCAGAAGCTCGGCGTCAACCTGTCCGACCTGCTCATCAGCCAGCCCGACACGG
GCGAGCAGGCCCTCGAGATCGTCGATTCGCTGGTGCGCTCCGGTGCGGTCGACCTGATCGTGATCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCGCCCTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTGACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCGTCGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCGCTCTTGGCCGAAGC
GGCCGACGGCGCGGCCGACAAGCCCGAGAAGGCCGAGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.44

93.333

0.769
  recA Acinetobacter baylyi ADP1

68.876

96.389

0.664
  recA Pseudomonas stutzeri DSM 10701

72.086

90.556

0.653
  recA Vibrio cholerae strain A1552

68.023

95.556

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.023

95.556

0.65
  recA Neisseria gonorrhoeae MS11

70.303

91.667

0.644
  recA Neisseria gonorrhoeae MS11

70.303

91.667

0.644
  recA Neisseria gonorrhoeae strain FA1090

70.303

91.667

0.644
  recA Acinetobacter baumannii D1279779

70.859

90.556

0.642
  recA Glaesserella parasuis strain SC1401

70.679

90

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.477

91.389

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

91.944

0.606
  recA Helicobacter pylori 26695

65.244

91.111

0.594
  recA Helicobacter pylori strain NCTC11637

65.244

91.111

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

90.833

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

93.056

0.572
  recA Streptococcus pneumoniae Rx1

57.79

98.056

0.567
  recA Streptococcus pneumoniae D39

57.79

98.056

0.567
  recA Streptococcus pneumoniae R6

57.79

98.056

0.567
  recA Streptococcus pneumoniae TIGR4

57.79

98.056

0.567
  recA Streptococcus mitis SK321

59.012

95.556

0.564
  recA Streptococcus pyogenes NZ131

61.398

91.389

0.561
  recA Lactococcus lactis subsp. cremoris KW2

61.027

91.944

0.561
  recA Streptococcus mutans UA159

60.909

91.667

0.558
  recA Streptococcus mitis NCTC 12261

60.121

91.944

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

89.167

0.539

Multiple sequence alignment