Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G3W89_RS26905 Genome accession   NZ_LR594659
Coordinates   5710049..5711116 (+) Length   355 a.a.
NCBI ID   WP_162577011.1    Uniprot ID   A0A6P2FJR4
Organism   Variovorax sp. PBL-H6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5705049..5716116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3W89_RS26890 (H6CHR_05373) - 5707211..5708659 (-) 1449 WP_162577008.1 sensor histidine kinase -
  G3W89_RS26895 (H6CHR_05374) - 5708685..5709356 (-) 672 WP_162577009.1 response regulator transcription factor -
  G3W89_RS26900 (H6CHR_05375) - 5709417..5709902 (-) 486 WP_162577010.1 MarR family transcriptional regulator -
  G3W89_RS26905 (H6CHR_05376) recA 5710049..5711116 (+) 1068 WP_162577011.1 recombinase RecA Machinery gene
  G3W89_RS26910 (H6CHR_05377) recX 5711126..5711575 (+) 450 WP_162577012.1 recombination regulator RecX -
  G3W89_RS26915 (H6CHR_05378) argC 5711595..5712524 (-) 930 WP_162577013.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  G3W89_RS26920 (H6CHR_05379) sucC 5712720..5713886 (+) 1167 WP_162577014.1 ADP-forming succinate--CoA ligase subunit beta -
  G3W89_RS26925 (H6CHR_05380) sucD 5713896..5714789 (+) 894 WP_162577015.1 succinate--CoA ligase subunit alpha -
  G3W89_RS26930 (H6CHR_05381) - 5714878..5715561 (+) 684 WP_162577016.1 TerC family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37734.33 Da        Isoelectric Point: 5.0512

>NTDB_id=1128177 G3W89_RS26905 WP_162577011.1 5710049..5711116(+) (recA) [Variovorax sp. PBL-H6]
MDALVKGSSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPTLSREIENKVRESLGIPLLPEDAGEGASGA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1128177 G3W89_RS26905 WP_162577011.1 5710049..5711116(+) (recA) [Variovorax sp. PBL-H6]
ATGGACGCACTCGTCAAAGGCAGCAGCATTTCGGTCGCAGGCAGCGAAAAGGCCAAGGCTCTGCAAGCCGCCCTGGCCCA
GATCGAAAAGCAATTCGGCAAGGGCACCATCATGCGGCTCGGCGAGGGGGAGGCGCTCGAAGACATCCAGGTGGTCTCCA
CGGGCTCGCTGGGCCTGGACATCGCCCTGGGGGTCGGCGGCCTTCCCCGCGGCCGCGTGATCGAGATCTACGGGCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCCAGATGCAGAAGCAGGCCGGCACCTGTGCCTTCGTCGATGC
CGAGCATGCGCTGGACGTTCAGTACGCTCAAAAGCTGGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCCCTGGAAATCGTTGATTCGCTGGTGCGCTCTGGCGCGGTCGATCTGATCGTCGTCGACTCGGTGGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGTGAAATGGGTGACTCGCTGCCCGGCCTGCAGGCGCGGCTCATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACTATCAAGAAGACCAACTGCATGGTCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAGACCACCACCGGCGGCAATGCACTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCGATCGGGAATGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCACCCTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTATAACGGCGAGAAGATCGGGCAGGGCCGCGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCGACGCTCTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTTCTGCCCGAGGA
CGCGGGCGAGGGCGCCTCCGGGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P2FJR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.439

88.451

0.738
  recA Acinetobacter baylyi ADP1

73.065

90.986

0.665
  recA Neisseria gonorrhoeae MS11

71.646

92.394

0.662
  recA Neisseria gonorrhoeae MS11

71.646

92.394

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.646

92.394

0.662
  recA Pseudomonas stutzeri DSM 10701

72.755

90.986

0.662
  recA Acinetobacter baumannii D1279779

72.446

90.986

0.659
  recA Glaesserella parasuis strain SC1401

71.037

92.394

0.656
  recA Vibrio cholerae strain A1552

69.789

93.239

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.789

93.239

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

91.831

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

92.676

0.614
  recA Helicobacter pylori strain NCTC11637

65.951

91.831

0.606
  recA Helicobacter pylori 26695

65.951

91.831

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.113

0.6
  recA Streptococcus mutans UA159

61.29

96.056

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

61.905

94.648

0.586
  recA Streptococcus pyogenes NZ131

62.236

93.239

0.58
  recA Streptococcus pneumoniae Rx1

61.446

93.521

0.575
  recA Streptococcus pneumoniae D39

61.446

93.521

0.575
  recA Streptococcus pneumoniae R6

61.446

93.521

0.575
  recA Streptococcus pneumoniae TIGR4

61.446

93.521

0.575
  recA Lactococcus lactis subsp. cremoris KW2

61.145

93.521

0.572
  recA Streptococcus mitis SK321

61.145

93.521

0.572
  recA Streptococcus mitis NCTC 12261

61.145

93.521

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.423

0.555

Multiple sequence alignment