Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL20_RS09335 Genome accession   NZ_LR594050
Coordinates   1886554..1887696 (-) Length   380 a.a.
NCBI ID   WP_003085104.1    Uniprot ID   A0A4V0HGH9
Organism   Streptococcus porcinus strain NCTC10925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881554..1892696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL20_RS09310 (NCTC10925_01873) - 1883123..1884685 (-) 1563 WP_093959029.1 DUF2079 domain-containing protein -
  FGL20_RS09315 (NCTC10925_01874) - 1884811..1885116 (-) 306 WP_003084435.1 DUF1292 domain-containing protein -
  FGL20_RS09320 (NCTC10925_01875) ruvX 1885127..1885546 (-) 420 WP_003084867.1 Holliday junction resolvase RuvX -
  FGL20_RS09325 (NCTC10925_01876) - 1885543..1885812 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FGL20_RS09330 (NCTC10925_01877) spx 1885924..1886322 (-) 399 WP_093959030.1 transcriptional regulator Spx -
  FGL20_RS09335 (NCTC10925_01878) recA 1886554..1887696 (-) 1143 WP_003085104.1 recombinase RecA Machinery gene
  FGL20_RS09340 (NCTC10925_01879) cinA 1887786..1889045 (-) 1260 WP_003083068.1 competence/damage-inducible protein A Machinery gene
  FGL20_RS09345 (NCTC10925_01880) - 1889146..1889715 (-) 570 WP_003083576.1 DNA-3-methyladenine glycosylase I -
  FGL20_RS09350 (NCTC10925_01881) ruvA 1889719..1890312 (-) 594 WP_003084468.1 Holliday junction branch migration protein RuvA -
  FGL20_RS09355 (NCTC10925_01882) - 1890314..1891537 (-) 1224 WP_003082865.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40973.56 Da        Isoelectric Point: 4.7890

>NTDB_id=1128066 FGL20_RS09335 WP_003085104.1 1886554..1887696(-) (recA) [Streptococcus porcinus strain NCTC10925]
MAKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDNNIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDVIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPDIFEEIDHKVRVKVGLLEDDIEQEDIIETTSNQSADELVLELDDAIEIED

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1128066 FGL20_RS09335 WP_003085104.1 1886554..1887696(-) (recA) [Streptococcus porcinus strain NCTC10925]
TTGGCAAAAAAAGTGAAAAAAACAGAAGAAATTACCAAAAAATTTGGCGATGATCGTCGTAAAGCTTTAGATGATGCTTT
AAAAAATATTGAGAAGGATTTCGGGAAAGGTGCAGTTATGCGTCTCGGAGAAAGAGCTGAGCAAAAGGTTCAAGTTATGA
GCTCTGGAAGCCTTGCTCTGGACATTGCTTTAGGTGCGGGTGGCTATCCTAAGGGTCGTATTATCGAAATTTATGGGCCA
GAATCATCAGGTAAAACAACTGTTGCTCTCCATGCAGTTGCTCAGGCTCAAAAAGAAGGTGGCATTGCCGCTTTTATTGA
TGCTGAACATGCCCTAGATCCTGCGTATGCTGCTTCTTTAGGTGTTAATATTGATGAGTTGTTGCTGTCGCAGCCAGACT
CTGGTGAGCAAGGGCTTGAAATTGCAGGTAAATTAATCGACTCAGGTGCAGTTGATTTAGTAGTAGTGGACTCGGTTGCA
GCATTAGTGCCACGTGCAGAAATTGATGGTGATATTGGGGATAGCCACGTTGGTTTGCAGGCTCGGATGATGAGTCAGGC
CATGCGTAAGCTATCAGCTTCTATCAATAAAACTAAAACGATTGCTATTTTTATTAACCAGTTACGTGAAAAAGTTGGAG
TTATGTTTGGTAATCCAGAAACAACGCCTGGAGGCCGTGCGCTGAAATTCTACTCCTCTGTTCGATTGGATGTTCGTGGA
AATACACAAATTAAAGGTACTGGTGAACAAAAAGATAACAACATAGGGAAAGAAACTAAAATCAAAGTTGTAAAAAATAA
AGTTGCTCCTCCATTTAAAGTAGCCGAAGTGGAAATTATGTATGGAGAAGGTATTTCACGCACAGGTGAGTTGATTAAAA
TTGCTTCAGATTTAGATGTTATTCAAAAAGCGGGTGCTTGGTTTTCTTATAATGGCGAAAAAATCGGACAAGGTTCTGAG
AATGCTAAAAAATTCTTGGCAGATCACCCTGATATCTTTGAAGAAATTGATCATAAGGTACGTGTGAAAGTTGGCCTCTT
AGAAGACGACATAGAGCAAGAAGACATTATCGAGACGACATCGAACCAAAGTGCTGATGAACTCGTCCTTGAGTTGGATG
ATGCTATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0HGH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.034

100

0.897
  recA Streptococcus pyogenes NZ131

89.474

100

0.895
  recA Streptococcus mitis NCTC 12261

83.896

100

0.85
  recA Streptococcus mitis SK321

83.377

100

0.845
  recA Streptococcus pneumoniae Rx1

83.117

100

0.842
  recA Streptococcus pneumoniae D39

83.117

100

0.842
  recA Streptococcus pneumoniae R6

83.117

100

0.842
  recA Streptococcus pneumoniae TIGR4

83.117

100

0.842
  recA Lactococcus lactis subsp. cremoris KW2

77.299

91.579

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

68.391

91.579

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

69.605

86.579

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.404

90

0.553
  recA Neisseria gonorrhoeae strain FA1090

62.538

87.105

0.545
  recA Neisseria gonorrhoeae MS11

62.538

87.105

0.545
  recA Neisseria gonorrhoeae MS11

62.538

87.105

0.545
  recA Glaesserella parasuis strain SC1401

59.118

89.474

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

85.526

0.526
  recA Vibrio cholerae strain A1552

61.538

85.526

0.526
  recA Acinetobacter baylyi ADP1

60.923

85.526

0.521
  recA Acinetobacter baumannii D1279779

60.923

85.526

0.521
  recA Pseudomonas stutzeri DSM 10701

54.875

94.474

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

85

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.105

0.513
  recA Helicobacter pylori strain NCTC11637

57.576

86.842

0.5
  recA Helicobacter pylori 26695

57.576

86.842

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.306

83.421

0.495

Multiple sequence alignment