Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EXC59_RS02960 Genome accession   NZ_LR215050
Coordinates   609990..610988 (-) Length   332 a.a.
NCBI ID   WP_035369310.1    Uniprot ID   A0A449BJE1
Organism   Acholeplasma hippikon strain NCTC10172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 604990..615988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXC59_RS02945 (NCTC10172_00593) - 605487..606128 (+) 642 WP_035369317.1 hypothetical protein -
  EXC59_RS02950 (NCTC10172_00594) - 606172..608166 (-) 1995 WP_035369315.1 ABC transporter ATP-binding protein -
  EXC59_RS02955 (NCTC10172_00595) - 608174..609907 (-) 1734 WP_035369313.1 ABC transporter ATP-binding protein -
  EXC59_RS02960 (NCTC10172_00596) recA 609990..610988 (-) 999 WP_035369310.1 recombinase RecA Machinery gene
  EXC59_RS02965 (NCTC10172_00597) pgsA 611040..611627 (-) 588 WP_035369309.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXC59_RS02970 (NCTC10172_00598) rpsT 611731..611991 (+) 261 WP_035369307.1 30S ribosomal protein S20 -
  EXC59_RS02975 (NCTC10172_00599) - 612068..612739 (-) 672 WP_051659021.1 PolC-type DNA polymerase III -
  EXC59_RS02980 (NCTC10172_00600) holA 612736..613683 (-) 948 WP_162164011.1 DNA polymerase III subunit delta -
  EXC59_RS02985 (NCTC10172_00601) - 613735..615513 (-) 1779 WP_162164010.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35774.05 Da        Isoelectric Point: 6.0660

>NTDB_id=1125912 EXC59_RS02960 WP_035369310.1 609990..610988(-) (recA) [Acholeplasma hippikon strain NCTC10172]
MSDDNKKQQALELALKQIEKQFGKGSIMKLGDEADHSIEVIPTGSIALDVALGIGGYPRGRIIEIYGPESSGKTTLTLHA
MASAQKQGGTVAFIDAEHALDPTYAKALGVNLNSLILSQPDTGEQALDIAEALIKSGSIDMIVIDSVAALVPENELNGDM
SANHVGLQARMMSQAMRKLSGVISKTNVVAIFINQIREKVGIMFGNPETTTGGRALKFFSSVRLEIRKAESIKVGNDITG
IRSNVKVVKSKVAPPLKTASIDIIYGTGISRSGEILDMAVELDFVNKSGAWFNIGDERLGQGRENARAYLENKPELLDEL
EAKILEHYNIKK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=1125912 EXC59_RS02960 WP_035369310.1 609990..610988(-) (recA) [Acholeplasma hippikon strain NCTC10172]
ATGAGTGATGATAATAAAAAACAGCAGGCCTTAGAACTTGCGTTAAAACAGATTGAAAAACAATTCGGTAAAGGTTCAAT
TATGAAACTTGGTGATGAAGCAGATCACTCAATCGAAGTTATTCCAACAGGGTCAATTGCATTAGATGTTGCACTAGGCA
TTGGTGGATATCCAAGAGGAAGAATCATTGAAATTTATGGACCTGAATCTAGTGGTAAAACAACATTAACTTTACATGCA
ATGGCAAGTGCCCAAAAACAAGGTGGCACGGTTGCATTTATTGATGCTGAACACGCCTTAGATCCAACATATGCAAAAGC
CTTAGGTGTAAACCTAAACAGTTTAATTCTTTCACAACCAGATACAGGAGAACAAGCACTTGATATTGCAGAGGCTTTAA
TTAAGTCTGGTTCAATTGATATGATTGTTATTGACTCGGTTGCTGCGTTAGTACCTGAAAACGAATTAAATGGTGATATG
TCTGCAAACCATGTTGGTTTACAAGCACGTATGATGAGCCAAGCAATGAGAAAATTATCAGGCGTGATTTCAAAAACAAA
TGTGGTTGCAATTTTCATTAACCAAATTAGAGAAAAAGTTGGTATTATGTTTGGTAACCCAGAAACAACAACTGGCGGTA
GAGCACTTAAGTTCTTTTCATCTGTTCGTTTAGAAATCAGAAAAGCAGAATCAATTAAAGTTGGTAATGATATTACGGGT
ATTCGCTCTAACGTGAAAGTTGTTAAATCTAAAGTTGCGCCACCATTAAAAACAGCATCAATTGATATTATCTATGGAAC
TGGCATTTCAAGAAGCGGAGAAATTCTTGATATGGCAGTTGAATTAGATTTTGTTAATAAGAGTGGTGCTTGGTTTAATA
TTGGTGATGAACGTTTAGGTCAAGGTAGAGAAAATGCAAGAGCATACCTTGAAAATAAACCTGAATTATTAGATGAATTA
GAAGCGAAAATTTTAGAACACTACAATATCAAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A449BJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.061

99.398

0.657
  recA Latilactobacillus sakei subsp. sakei 23K

63.804

98.193

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.226

100

0.599
  recA Neisseria gonorrhoeae MS11

60.923

97.892

0.596
  recA Neisseria gonorrhoeae strain FA1090

60.923

97.892

0.596
  recA Neisseria gonorrhoeae MS11

60.923

97.892

0.596
  recA Streptococcus pneumoniae R6

60.182

99.096

0.596
  recA Streptococcus pneumoniae TIGR4

60.182

99.096

0.596
  recA Streptococcus mitis NCTC 12261

60.182

99.096

0.596
  recA Streptococcus pneumoniae Rx1

60.182

99.096

0.596
  recA Streptococcus pneumoniae D39

60.182

99.096

0.596
  recA Streptococcus mitis SK321

59.878

99.096

0.593
  recA Streptococcus pyogenes NZ131

60.802

97.59

0.593
  recA Ralstonia pseudosolanacearum GMI1000

62.62

94.277

0.59
  recA Streptococcus mutans UA159

59.394

99.398

0.59
  recA Helicobacter pylori 26695

59.327

98.494

0.584
  recA Glaesserella parasuis strain SC1401

60.502

96.084

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.752

97.289

0.581
  recA Lactococcus lactis subsp. cremoris KW2

59.752

97.289

0.581
  recA Helicobacter pylori strain NCTC11637

59.021

98.494

0.581
  recA Vibrio cholerae strain A1552

58.824

97.289

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.824

97.289

0.572
  recA Pseudomonas stutzeri DSM 10701

58.696

96.988

0.569
  recA Acinetobacter baumannii D1279779

56.79

97.59

0.554
  recA Acinetobacter baylyi ADP1

56.79

97.59

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.692

97.892

0.545

Multiple sequence alignment