Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL264_RS01535 Genome accession   NZ_LR134519
Coordinates   320707..321750 (+) Length   347 a.a.
NCBI ID   WP_000952104.1    Uniprot ID   K2KMN8
Organism   Helicobacter pylori strain NCTC12823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315707..326750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL264_RS01500 (NCTC12823_00302) - 316299..316517 (+) 219 WP_001860815.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  EL264_RS01505 (NCTC12823_00303) ccoP 316519..317397 (+) 879 WP_126474037.1 cytochrome-c oxidase, cbb3-type subunit III -
  EL264_RS01510 (NCTC12823_00304) - 317408..317614 (+) 207 WP_000670509.1 DUF4006 family protein -
  EL264_RS01515 (NCTC12823_00306) - 317715..318299 (+) 585 WP_126474038.1 hypothetical protein -
  EL264_RS01520 (NCTC12823_00307) - 318311..318892 (+) 582 WP_126474039.1 hypothetical protein -
  EL264_RS01525 (NCTC12823_00308) - 318981..319748 (+) 768 WP_126474040.1 hypothetical protein -
  EL264_RS01530 (NCTC12823_00309) - 319745..320608 (-) 864 WP_126474041.1 menaquinone biosynthesis family protein -
  EL264_RS01535 (NCTC12823_00310) recA 320707..321750 (+) 1044 WP_000952104.1 recombinase RecA Machinery gene
  EL264_RS01540 (NCTC12823_00311) eno 321762..323042 (+) 1281 WP_126474042.1 phosphopyruvate hydratase -
  EL264_RS01545 (NCTC12823_00312) - 323035..323310 (+) 276 WP_000146222.1 hypothetical protein -
  EL264_RS01550 (NCTC12823_00313) - 323328..323924 (+) 597 WP_197720773.1 AMIN domain-containing protein -
  EL264_RS01555 (NCTC12823_00314) - 323929..324417 (+) 489 WP_126474044.1 shikimate kinase -
  EL264_RS01560 (NCTC12823_00315) - 324439..325395 (+) 957 WP_000952278.1 PDC sensor domain-containing protein -
  EL264_RS01565 (NCTC12823_00316) - 325392..326513 (-) 1122 WP_126474045.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37653.40 Da        Isoelectric Point: 5.7156

>NTDB_id=1123782 EL264_RS01535 WP_000952104.1 320707..321750(+) (recA) [Helicobacter pylori strain NCTC12823]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1123782 EL264_RS01535 WP_000952104.1 320707..321750(+) (recA) [Helicobacter pylori strain NCTC12823]
ATGGCAATAGATGAAGACAAACAAAAAGCAATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATTTAGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCACATT
ATCGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
ATTGGGCGTGGATACGCAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CTAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCGAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTTTAATCTTTATCAATCAAATCAGAATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTCGTTAAAAATAAAGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTATTGAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2KMN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.712

100

0.997
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

93.66

0.608
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment