Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL256_RS01565 Genome accession   NZ_LR134517
Coordinates   327002..328045 (+) Length   347 a.a.
NCBI ID   WP_000963114.1    Uniprot ID   A0AB72ZUC4
Organism   Helicobacter pylori strain NCTC13345     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322002..333045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS01530 (NCTC13345_00309) - 322592..322810 (+) 219 WP_001860815.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  EL256_RS01535 (NCTC13345_00310) ccoP 322812..323690 (+) 879 WP_126442444.1 cytochrome-c oxidase, cbb3-type subunit III -
  EL256_RS01540 (NCTC13345_00311) - 323701..323907 (+) 207 WP_114992327.1 DUF4006 family protein -
  EL256_RS01545 (NCTC13345_00313) - 324008..324595 (+) 588 WP_126442445.1 hypothetical protein -
  EL256_RS01550 (NCTC13345_00314) - 324608..325189 (+) 582 WP_126442446.1 hypothetical protein -
  EL256_RS01555 (NCTC13345_00315) - 325276..326043 (+) 768 WP_126442447.1 hypothetical protein -
  EL256_RS01560 (NCTC13345_00316) - 326040..326903 (-) 864 WP_126442448.1 menaquinone biosynthesis family protein -
  EL256_RS01565 (NCTC13345_00317) recA 327002..328045 (+) 1044 WP_000963114.1 recombinase RecA Machinery gene
  EL256_RS01570 (NCTC13345_00318) eno 328056..329336 (+) 1281 WP_126442449.1 phosphopyruvate hydratase -
  EL256_RS01575 (NCTC13345_00319) - 329329..329604 (+) 276 WP_000146234.1 hypothetical protein -
  EL256_RS01580 (NCTC13345_00320) - 329621..330217 (+) 597 WP_024111839.1 AMIN domain-containing protein -
  EL256_RS01585 (NCTC13345_00321) - 330222..330710 (+) 489 WP_126442450.1 shikimate kinase -
  EL256_RS01590 (NCTC13345_00322) - 330732..331688 (+) 957 WP_108350014.1 PDC sensor domain-containing protein -
  EL256_RS01595 (NCTC13345_00323) - 331685..332818 (-) 1134 WP_126442451.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37622.33 Da        Isoelectric Point: 5.5216

>NTDB_id=1123754 EL256_RS01565 WP_000963114.1 327002..328045(+) (recA) [Helicobacter pylori strain NCTC13345]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1123754 EL256_RS01565 WP_000963114.1 327002..328045(+) (recA) [Helicobacter pylori strain NCTC13345]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGACTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATTTGGCTTTAGGAA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGACCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGGGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGTATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCAAGCACAGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCAGTGGCGGCCCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGACTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTTTTGCACAAGATGAA
CACCACGCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGACGGGTTATGGGAGTCCCGAGACCACAACCGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATC
GGTAATAGGGCTAAAGCCAAAGTCGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTACTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.559

100

0.986
  recA Helicobacter pylori 26695

97.983

100

0.98
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.744

94.524

0.735
  recA Neisseria gonorrhoeae MS11

65.538

93.66

0.614
  recA Neisseria gonorrhoeae MS11

65.538

93.66

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.538

93.66

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

59.451

94.524

0.562
  recA Streptococcus pneumoniae D39

54.986

100

0.556
  recA Streptococcus pneumoniae Rx1

54.986

100

0.556
  recA Streptococcus pneumoniae R6

54.986

100

0.556
  recA Streptococcus pneumoniae TIGR4

54.986

100

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

53.782

100

0.553
  recA Streptococcus pyogenes NZ131

56.667

95.101

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.839

94.813

0.539
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mitis NCTC 12261

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.09

96.254

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522

Multiple sequence alignment