Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   P73_RS11095 Genome accession   NZ_CP004393
Coordinates   2209714..2210787 (+) Length   357 a.a.
NCBI ID   WP_043869599.1    Uniprot ID   A0A0B5DV66
Organism   Celeribacter indicus strain P73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2204714..2215787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P73_RS11085 (P73_2197) - 2205849..2207030 (+) 1182 WP_043869598.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  P73_RS11090 (P73_2198) - 2207208..2209502 (+) 2295 WP_043871632.1 ATP-binding protein -
  P73_RS11095 (P73_2199) recA 2209714..2210787 (+) 1074 WP_043869599.1 recombinase RecA Machinery gene
  P73_RS11100 (P73_2200) alaS 2210987..2213638 (+) 2652 WP_043869600.1 alanine--tRNA ligase -
  P73_RS11105 (P73_2201) - 2213643..2213930 (+) 288 WP_043869601.1 DUF1330 domain-containing protein -
  P73_RS26650 (P73_2202) - 2214013..2214732 (-) 720 WP_052453198.1 hypothetical protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 38390.66 Da        Isoelectric Point: 4.7864

>NTDB_id=112366 P73_RS11095 WP_043869599.1 2209714..2210787(+) (recA) [Celeribacter indicus strain P73]
MATATRDMAKNDSEKQKALDSALAQIERQFGKGSIMKLGADNPVQEIEATSTGSLGLDIALGIGGIPKGRIVEIYGPESS
GKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYAKKLGVDLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALT
PKSELEGDMGDSSVGVQARLMSQAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGA
IKDRDEVVGSETRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGAWFSYGDERIGQGRENAKRFLK
ENTRIALEIEDKIRAAHGLDFDLGDGFDQDEMIEGDE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=112366 P73_RS11095 WP_043869599.1 2209714..2210787(+) (recA) [Celeribacter indicus strain P73]
ATGGCAACGGCGACCAGAGACATGGCGAAGAACGACAGCGAGAAGCAGAAGGCGCTCGACAGCGCGCTGGCCCAGATCGA
GCGGCAGTTCGGCAAGGGCTCGATCATGAAACTCGGCGCCGACAACCCGGTGCAGGAGATCGAGGCGACCTCCACCGGCT
CGCTCGGCCTCGACATCGCGCTCGGCATCGGCGGCATTCCCAAGGGCCGGATCGTGGAGATCTACGGCCCCGAATCCTCG
GGCAAGACGACGCTGACGCTGCATTGCGTGGCCGAGGAACAGAAGAAGGGCGGCGTCTGCGCCTTTGTCGATGCGGAACA
TGCGCTCGACCCGATCTATGCGAAGAAGCTCGGCGTCGATCTCGACGAGCTGCTGATTTCCCAGCCCGACACCGGCGAGC
AGGCGCTGGAGATCGTGGACACGCTGGTGCGCTCCGGCGCGGTGTCGCTCGTGGTGGTCGACTCGGTCGCCGCCCTGACC
CCGAAATCGGAGCTCGAGGGCGACATGGGCGACAGCTCCGTGGGCGTGCAGGCGCGGCTCATGTCCCAGGCGATGCGCAA
GCTCACCGGCTCGATCTCCCGCTCGAAATGCACCGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTCATGTTCG
GGTCGCCGGAGACGACGACGGGCGGCAACGCGCTCAAGTTCTACTCCTCCGTGCGCCTCGACATCCGCCGCACCGGCGCG
ATCAAGGATCGCGACGAGGTGGTGGGGTCGGAAACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCGCCCTTCAAGCA
GGTCGAATTCGACATTATGTATGGCGAAGGCATTTCGAAGACCGGCGAGCTGCTCGATCTCGGCGTGAAGGCGGGCGTGG
TCGACAAGTCCGGCGCGTGGTTCTCCTATGGTGACGAGCGCATCGGCCAGGGGCGCGAGAACGCGAAACGCTTCCTCAAG
GAAAACACCCGGATCGCGCTCGAGATCGAGGACAAGATCCGCGCCGCCCACGGGCTCGATTTCGATCTCGGCGACGGGTT
CGATCAGGACGAGATGATCGAGGGCGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B5DV66

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

69.231

94.678

0.655

  recA Neisseria gonorrhoeae strain FA1090

69.231

94.678

0.655

  recA Neisseria gonorrhoeae MS11

69.231

94.678

0.655

  recA Pseudomonas stutzeri DSM 10701

70.988

90.756

0.644

  recA Glaesserella parasuis strain SC1401

71.028

89.916

0.639

  recA Acinetobacter baumannii D1279779

70.279

90.476

0.636

  recA Ralstonia pseudosolanacearum GMI1000

71.975

87.955

0.633

  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.969

90.476

0.633

  recA Vibrio cholerae strain A1552

69.969

90.476

0.633

  recA Acinetobacter baylyi ADP1

69.969

90.476

0.633

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.97

92.437

0.619

  recA Bacillus subtilis subsp. subtilis str. 168

67.378

91.877

0.619

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.373

93.838

0.613

  recA Helicobacter pylori strain NCTC11637

66.768

91.877

0.613

  recA Helicobacter pylori 26695

66.159

91.877

0.608

  recA Lactococcus lactis subsp. cremoris KW2

63.772

93.557

0.597

  recA Streptococcus pneumoniae D39

63.142

92.717

0.585

  recA Streptococcus pneumoniae TIGR4

63.142

92.717

0.585

  recA Streptococcus pneumoniae R6

63.142

92.717

0.585

  recA Streptococcus pneumoniae Rx1

63.142

92.717

0.585

  recA Streptococcus mitis NCTC 12261

62.84

92.717

0.583

  recA Streptococcus mitis SK321

62.538

92.717

0.58

  recA Latilactobacillus sakei subsp. sakei 23K

62.048

92.997

0.577

  recA Streptococcus mutans UA159

62.121

92.437

0.574

  recA Streptococcus pyogenes NZ131

62.006

92.157

0.571

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

90.756

0.541


Multiple sequence alignment