Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL247_RS02135 Genome accession   NZ_LR134509
Coordinates   415752..416789 (-) Length   345 a.a.
NCBI ID   WP_005022374.1    Uniprot ID   A0A0N1MQL1
Organism   Helicobacter pullorum strain NCTC13154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 410752..421789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL247_RS02105 (NCTC13154_00427) - 411113..411973 (-) 861 WP_104745598.1 menaquinone biosynthesis family protein -
  EL247_RS02110 (NCTC13154_00428) waaF 412015..413031 (-) 1017 WP_126441934.1 lipopolysaccharide heptosyltransferase II -
  EL247_RS02115 (NCTC13154_00429) - 413028..413519 (-) 492 WP_104745600.1 shikimate kinase -
  EL247_RS02120 (NCTC13154_00430) - 413506..414216 (-) 711 WP_232019771.1 AMIN domain-containing protein -
  EL247_RS02125 (NCTC13154_00431) - 414213..414467 (-) 255 WP_005022371.1 hypothetical protein -
  EL247_RS02130 (NCTC13154_00432) eno 414467..415738 (-) 1272 WP_104745601.1 phosphopyruvate hydratase -
  EL247_RS02135 (NCTC13154_00433) recA 415752..416789 (-) 1038 WP_005022374.1 recombinase RecA Machinery gene
  EL247_RS02140 (NCTC13154_00434) - 417056..417265 (+) 210 WP_054195471.1 DUF4492 domain-containing protein -
  EL247_RS02145 (NCTC13154_00435) - 417275..418816 (+) 1542 WP_104745602.1 cytochrome ubiquinol oxidase subunit I -
  EL247_RS02150 (NCTC13154_00436) cydB 418826..419950 (+) 1125 WP_104745603.1 cytochrome d ubiquinol oxidase subunit II -
  EL247_RS02155 (NCTC13154_00438) - 420068..420700 (+) 633 WP_104745604.1 3-methyladenine DNA glycosylase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37346.89 Da        Isoelectric Point: 5.0722

>NTDB_id=1123549 EL247_RS02135 WP_005022374.1 415752..416789(-) (recA) [Helicobacter pullorum strain NCTC13154]
MALDENKQKAIELAIKQIDKAFGKGALIRLGDKPVEKIDSISTGSLGLDIALGIGGIPKGRIIEIYGPESSGKTTLALQI
VAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFGEQALEILETLTRSGGVDLIIVDSVAALTPKSEIEGDM
GDQHVGLQARLMSQALRKVTGIIHKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNI
GNRVKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQGKENAKIFLKENPQIAQE
IEDKIKASISLTDDLSSSDDENLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1123549 EL247_RS02135 WP_005022374.1 415752..416789(-) (recA) [Helicobacter pullorum strain NCTC13154]
ATGGCATTAGATGAAAATAAGCAAAAAGCAATTGAATTAGCAATTAAACAAATTGATAAAGCCTTTGGTAAAGGTGCTTT
AATAAGACTTGGAGATAAACCGGTTGAAAAAATCGATTCAATTAGCACAGGTTCTTTGGGGCTTGATATCGCACTTGGCA
TTGGAGGGATTCCAAAAGGTAGAATCATCGAAATTTACGGACCAGAAAGTTCAGGAAAAACTACCCTTGCACTCCAAATT
GTTGCTGAATGTCAAAAAAAAGGCGGAATTTGTGCCTTTATTGATGCAGAACATGCACTAGATGTAACATACGCCAAACG
ACTTGGAGTAGATGTAGAAAATCTACTCGTCTCTCAACCTGACTTTGGAGAGCAAGCTTTGGAAATTTTAGAAACCCTCA
CAAGAAGTGGAGGGGTAGATTTAATCATCGTTGATTCTGTTGCTGCACTTACCCCAAAAAGCGAGATTGAAGGGGATATG
GGAGATCAGCATGTAGGGCTTCAAGCAAGACTTATGAGTCAGGCTTTGAGAAAAGTTACAGGTATCATTCACAAAATGAA
TACCACCGTTATTTTTATCAATCAAATTCGTATGAAAATTGGAGTTATGGGATATGGAAGTCCAGAAACTACAACAGGAG
GAAATGCACTCAAATTCTATGCAAGTGTGAGAATTGATGTAAGACGAATCGCAACTCTCAAACAAGGTGAGCAAAATATC
GGGAATCGTGTCAAAGCAAAAGTGGTTAAAAATAAGGTTGCTCCGCCTTTTAGAGGTGCTGAATTTGATATTATGTTTGG
CGAAGGGATTAGCAAAGAAGGGGAACTCATCGACTATGGAGTAAAGCTTGATATTGTCGATAAAAGCGGTGCTTGGTTTA
GCTATGAGGACAAAAAACTAGGACAAGGCAAAGAAAATGCAAAAATTTTCTTGAAAGAAAATCCACAAATAGCTCAAGAA
ATCGAAGATAAAATCAAAGCTTCTATTAGCCTAACAGATGATTTATCCTCTAGTGATGATGAAAATTTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N1MQL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

82.609

100

0.826
  recA Helicobacter pylori strain NCTC11637

82.319

100

0.823
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.551

99.42

0.771
  recA Neisseria gonorrhoeae strain FA1090

67.485

94.493

0.638
  recA Neisseria gonorrhoeae MS11

67.485

94.493

0.638
  recA Neisseria gonorrhoeae MS11

67.485

94.493

0.638
  recA Acinetobacter baylyi ADP1

63.953

99.71

0.638
  recA Pseudomonas stutzeri DSM 10701

66.364

95.652

0.635
  recA Acinetobacter baumannii D1279779

65.758

95.652

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.362

0.62
  recA Glaesserella parasuis strain SC1401

62.209

99.71

0.62
  recA Ralstonia pseudosolanacearum GMI1000

66.667

91.304

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.636

95.652

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.889

93.913

0.6
  recA Vibrio cholerae strain A1552

63.889

93.913

0.6
  recA Streptococcus pneumoniae R6

59.42

100

0.594
  recA Streptococcus pneumoniae Rx1

59.42

100

0.594
  recA Streptococcus pneumoniae D39

59.42

100

0.594
  recA Streptococcus pneumoniae TIGR4

59.42

100

0.594
  recA Lactococcus lactis subsp. cremoris KW2

60.241

96.232

0.58
  recA Streptococcus mitis NCTC 12261

60.121

95.942

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

57.061

100

0.574
  recA Streptococcus mitis SK321

59.819

95.942

0.574
  recA Streptococcus pyogenes NZ131

60.429

94.493

0.571
  recA Streptococcus mutans UA159

58.084

96.812

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

94.493

0.562

Multiple sequence alignment