Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL296_RS05130 Genome accession   NZ_LR134485
Coordinates   1046720..1047784 (+) Length   354 a.a.
NCBI ID   WP_121584967.1    Uniprot ID   -
Organism   Citrobacter youngae strain NCTC13709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041720..1052784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL296_RS05100 (NCTC13709_01037) srlD 1041891..1042670 (-) 780 WP_124020819.1 sorbitol-6-phosphate dehydrogenase -
  EL296_RS05105 (NCTC13709_01038) srlB 1042688..1043050 (-) 363 WP_048213019.1 PTS glucitol/sorbitol transporter subunit IIA -
  EL296_RS05110 (NCTC13709_01039) - 1043064..1044035 (-) 972 WP_124020818.1 PTS glucitol/sorbitol transporter subunit IIB -
  EL296_RS05115 (NCTC13709_01040) srlA 1044032..1044594 (-) 563 Protein_982 PTS glucitol/sorbitol transporter subunit IIC -
  EL296_RS05120 (NCTC13709_01041) mltB 1044859..1045938 (+) 1080 WP_048213016.1 lytic murein transglycosylase B -
  EL296_RS05125 (NCTC13709_01042) pncC 1046130..1046627 (+) 498 WP_115601590.1 nicotinamide-nucleotide amidase -
  EL296_RS05130 (NCTC13709_01043) recA 1046720..1047784 (+) 1065 WP_121584967.1 recombinase RecA Machinery gene
  EL296_RS05135 (NCTC13709_01044) recX 1047871..1048371 (+) 501 WP_116361109.1 recombination regulator RecX -
  EL296_RS05140 (NCTC13709_01045) alaS 1048500..1051127 (+) 2628 WP_048213013.1 alanine--tRNA ligase -
  EL296_RS05145 (NCTC13709_01046) csrA 1051366..1051551 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38148.47 Da        Isoelectric Point: 4.7535

>NTDB_id=1123143 EL296_RS05130 WP_121584967.1 1046720..1047784(+) (recA) [Citrobacter youngae strain NCTC13709]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNSQDSTPDFSVDDSGEDVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1123143 EL296_RS05130 WP_121584967.1 1046720..1047784(+) (recA) [Citrobacter youngae strain NCTC13709]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTCGGTGAAGACCGTTCCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCAGAATCCTCCGGTAAAACAACGCTGACACTGCAGGTT
ATTGCCGCCGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCGGAACACGCGCTGGACCCTGTTTATGCCCGTAA
GCTGGGTGTTGATATCGATAATCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCCGGCGCGGTTGACGTTATCGTGGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGCGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACCACCGGTGGCA
ACGCCCTGAAATTCTATGCGTCTGTTCGTCTGGATATTCGTCGTATTGGCGCGGTGAAAGAAGGCGACAACGTGGTAGGT
AGCGAAACCCGCGTTAAGGTTGTGAAAAATAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATTCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAACGCAACTAACTGGCTGAAAGAAAACCCGGCAACCGCGAAAGAAATT
GAGAAGAAATTACGTGAGTTACTGCTCAATAGCCAGGATTCAACGCCTGATTTCTCCGTTGATGACAGTGGTGAAGACGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.792

97.74

0.799
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.792

97.74

0.799
  recA Pseudomonas stutzeri DSM 10701

74.474

94.068

0.701
  recA Acinetobacter baumannii D1279779

74.468

92.938

0.692
  recA Acinetobacter baylyi ADP1

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

61.128

95.198

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

57.865

100

0.582
  recA Helicobacter pylori 26695

60.831

95.198

0.579
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment