Detailed information NTG1122962

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: EL223_RS14825
• Genome accession: NZ_LR134474
• Coordinates: 3050376..3051437 (-)
• Length: 353 a.a.
• NCBI ID: WP_109349282.1
• Uniprot ID: A0A2U3AE57
• Organism: Kurthia zopfii strain NCTC404
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3035667..3051437	3050376..3051437	within	0

Gene organization within MGE regions

Location: 3035667..3051437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL223_RS14765 (NCTC404_03089)	-	3035667..3036875 (-)	1209	WP_126344624.1	ISL3 family transposase	-
EL223_RS14770 (NCTC404_03091)	-	3037212..3037487 (-)	276	WP_126344604.1	transposase	-
EL223_RS14775 (NCTC404_03092)	-	3037617..3038912 (-)	1296	WP_115329356.1	ISL3 family transposase	-
EL223_RS14780 (NCTC404_03093)	-	3039131..3040339 (-)	1209	WP_126344624.1	ISL3 family transposase	-
EL223_RS14785 (NCTC404_03094)	-	3040562..3041599 (-)	1038	WP_126344606.1	ISL3 family transposase	-
EL223_RS14790 (NCTC404_03095)	-	3041914..3042780 (-)	867	WP_109349288.1	2-oxoacid:ferredoxin oxidoreductase subunit beta	-
EL223_RS14795 (NCTC404_03096)	-	3042781..3044529 (-)	1749	WP_109349287.1	2-oxoacid:acceptor oxidoreductase subunit alpha	-
EL223_RS14800 (NCTC404_03097)	-	3044826..3045086 (+)	261	WP_126344608.1	hypothetical protein	-
EL223_RS14805 (NCTC404_03098)	-	3045122..3045814 (+)	693	WP_109349285.1	hypothetical protein	-
EL223_RS14810 (NCTC404_03099)	-	3045877..3046674 (-)	798	WP_109349284.1	TIGR00282 family metallophosphoesterase	-
EL223_RS14815 (NCTC404_03100)	rny	3046732..3048288 (-)	1557	WP_109349283.1	ribonuclease Y	-
EL223_RS14820 (NCTC404_03101)	-	3048875..3049948 (-)	1074	WP_232025920.1	ISL3 family transposase	-
EL223_RS15260 (NCTC404_03102)	-	3049970..3050170 (-)	201	WP_232025922.1	hypothetical protein	-
EL223_RS14825 (NCTC404_03103)	recA	3050376..3051437 (-)	1062	WP_109349282.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 38316.51 Da
• Isoelectric Point: 4.7775

>NTDB_id=1122962 EL223_RS14825 WP_109349282.1 3050376..3051437(-) (recA) [Kurthia zopfii strain NCTC404]
MNERKAALDNALKQIEKQFGKGSVMKLGEKSDIKIQTSSSGSLALDTALGIGGYPRGRVVEIYGPESSGKTTVTLHAIAE
IQKNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEITEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGIINKSNCIAIFINQVREKIGVMFGNPETTTGGRALKFYSSVRLEVRRAESIKQGNDIVGNRT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIIDIGVEKDIVQKSGSWYAYGDERLGQGRENAKEFLKENPSVKDEISRK
IREEAGIADDEITASPEEEEEMDKELALELEGK

Nucleotide

• Length: 1062 bp

>NTDB_id=1122962 EL223_RS14825 WP_109349282.1 3050376..3051437(-) (recA) [Kurthia zopfii strain NCTC404]
TTGAACGAACGTAAAGCTGCGTTAGACAACGCACTAAAACAAATTGAAAAGCAATTCGGTAAGGGTTCAGTAATGAAACT
TGGCGAGAAATCAGATATTAAAATTCAAACTTCATCTAGTGGTTCACTAGCTTTAGATACAGCACTAGGAATAGGCGGTT
ACCCTCGTGGACGTGTAGTAGAAATCTACGGACCAGAAAGTTCTGGTAAGACAACTGTTACTTTACATGCGATTGCTGAA
ATCCAAAAAAATGGTGGTCAAGCTGCGTTTATCGATGCTGAGCATGCATTGGATCCTGTATACGCACAAAAACTAGGTGT
TAATATTGATGAATTACTACTATCTCAACCAGATACGGGTGAGCAAGCTTTAGAAATTACTGAAGCTCTAGTACGTAGTG
GTGCAGTTGATATTATCGTAATTGACTCAGTAGCAGCATTAGTACCAAAAGCTGAAATTGAAGGCGAGATGGGTGACTCA
CATATGGGTCTACAAGCTCGTTTAATGTCACAAGCATTACGTAAATTATCTGGTATTATTAATAAATCGAACTGTATCGC
TATTTTCATTAACCAAGTTCGTGAAAAAATCGGTGTTATGTTCGGTAACCCTGAAACAACTACTGGTGGACGTGCGTTAA
AATTCTACTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAGTCAATCAAGCAAGGTAATGATATCGTTGGTAACCGTACG
AAAATCAAAGTTGTTAAAAATAAAGTTGCTCCACCATTCAAAACTGCTGAAGTTGATATTATGTATGGTGAAGGAATTTC
TAAAGAAGGCGAGATCATTGATATTGGTGTTGAAAAAGACATCGTTCAAAAATCTGGTTCTTGGTATGCATACGGCGATG
AACGTTTAGGTCAAGGTCGTGAAAATGCGAAAGAATTCTTAAAAGAAAACCCGTCTGTTAAAGACGAAATCTCTCGTAAG
ATTCGTGAGGAAGCTGGAATTGCTGATGACGAAATCACTGCTTCTCCAGAAGAAGAAGAAGAGATGGATAAAGAGTTAGC
TTTAGAATTAGAAGGTAAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A2U3AE57

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Bacillus subtilis subsp. subtilis str. 168	81.682	94.334	0.771
recA	Latilactobacillus sakei subsp. sakei 23K	73.077	95.751	0.7
recA	Streptococcus mutans UA159	65.278	100	0.666
recA	Streptococcus pyogenes NZ131	65.169	100	0.657
recA	Streptococcus mitis NCTC 12261	64.706	100	0.654
recA	Streptococcus pneumoniae TIGR4	63.989	100	0.654
recA	Streptococcus pneumoniae R6	63.989	100	0.654
recA	Streptococcus pneumoniae Rx1	63.989	100	0.654
recA	Streptococcus pneumoniae D39	63.989	100	0.654
recA	Streptococcus mitis SK321	64.426	100	0.652
recA	Vibrio cholerae strain A1552	63.739	100	0.637
recA	Vibrio cholerae O1 biovar El Tor strain E7946	63.739	100	0.637
recA	Lactococcus lactis subsp. cremoris KW2	67.47	94.051	0.635
recA	Ralstonia pseudosolanacearum GMI1000	68.196	92.635	0.632
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.223	96.601	0.62
recA	Helicobacter pylori 26695	63.557	97.167	0.618
recA	Acinetobacter baylyi ADP1	63.188	97.734	0.618
recA	Pseudomonas stutzeri DSM 10701	62.536	98.3	0.615
recA	Helicobacter pylori strain NCTC11637	63.265	97.167	0.615
recA	Acinetobacter baumannii D1279779	63.081	97.45	0.615
recA	Neisseria gonorrhoeae MS11	64.565	94.334	0.609
recA	Neisseria gonorrhoeae MS11	64.565	94.334	0.609
recA	Neisseria gonorrhoeae strain FA1090	64.565	94.334	0.609
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.046	93.201	0.606
recA	Glaesserella parasuis strain SC1401	65.312	90.652	0.592
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.813	90.652	0.569