Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL203_RS04225 Genome accession   NZ_LR134383
Coordinates   906886..907929 (+) Length   347 a.a.
NCBI ID   WP_058472162.1    Uniprot ID   -
Organism   Legionella jordanis strain NCTC11533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901886..912929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL203_RS04210 (NCTC11533_00863) - 904013..905068 (+) 1056 WP_058470366.1 hypothetical protein -
  EL203_RS04215 (NCTC11533_00864) - 905154..905711 (-) 558 WP_126320092.1 hypothetical protein -
  EL203_RS14295 (NCTC11533_00865) - 906033..906200 (+) 168 WP_156413820.1 hypothetical protein -
  EL203_RS04220 (NCTC11533_00866) - 906255..906740 (+) 486 WP_058470363.1 CinA family protein -
  EL203_RS04225 (NCTC11533_00867) recA 906886..907929 (+) 1044 WP_058472162.1 recombinase RecA Machinery gene
  EL203_RS04230 (NCTC11533_00868) recX 907922..908362 (+) 441 WP_058470362.1 recombination regulator RecX -
  EL203_RS04235 (NCTC11533_00869) alaS 908397..910985 (+) 2589 WP_058472161.1 alanine--tRNA ligase -
  EL203_RS04240 (NCTC11533_00870) - 911009..912304 (+) 1296 WP_064108335.1 aspartate kinase -
  EL203_RS04245 (NCTC11533_00871) mscL 912355..912747 (+) 393 WP_058470361.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37607.11 Da        Isoelectric Point: 5.1877

>NTDB_id=1122553 EL203_RS04225 WP_058472162.1 906886..907929(+) (recA) [Legionella jordanis strain NCTC11533]
MEDNKQKALSAALAQIERQFGKGSVMRMGDNQAVRDIEAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLQVI
AECQKKGGTAAFVDAEHALDPSYAAKLGVNVDELLVSQPDTGEQALEITDMLVRSAAVDVIIVDSVAALTPKAEIEGEMG
DAHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKKGDEILGS
ETRVKVVKNKVAPPFKTTDFDILYNEGISRESEIINLGAQLGLIEKSGAWYSYKQEKIGQGKDNVRLYLKENPQVAQVLE
QQIRAELLVKKLPVNAEAEETLESVDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1122553 EL203_RS04225 WP_058472162.1 906886..907929(+) (recA) [Legionella jordanis strain NCTC11533]
ATGGAAGACAATAAACAAAAAGCTCTAAGTGCGGCTCTCGCTCAAATTGAACGCCAATTTGGTAAAGGTTCTGTCATGCG
CATGGGTGATAACCAAGCAGTGCGCGACATTGAAGCCATTTCTACCGGATCCTTGGGGCTTGATATTGCCTTAGGTATTG
GCGGACTACCCAGAGGCCGAATTGTCGAAATTTATGGTCCTGAATCTTCAGGAAAAACTACGCTTACCCTGCAAGTGATT
GCGGAATGCCAGAAAAAAGGCGGCACGGCTGCTTTCGTTGATGCTGAGCATGCCTTAGATCCCAGTTACGCGGCCAAATT
AGGCGTGAATGTGGATGAGTTATTGGTTTCTCAACCCGATACTGGTGAACAGGCGCTGGAAATTACCGATATGCTGGTTC
GTTCGGCTGCAGTTGATGTGATCATTGTCGACTCAGTGGCGGCACTAACGCCCAAGGCTGAAATTGAAGGGGAAATGGGC
GATGCTCATGTGGGCTTACAAGCGAGATTGATGTCGCAGGCATTGCGCAAATTAACCGCTAATATTAAACGTTCCAACAC
TTTGGTTATCTTTATTAACCAAATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCTGAAACCACTACGGGTGGTAATG
CTCTTAAATTCTATGCTTCCGTGCGCCTGGATATTCGACGTGTGGGCTCCATTAAAAAGGGTGATGAAATCTTGGGCAGT
GAAACCCGAGTGAAAGTGGTTAAAAACAAAGTGGCGCCACCGTTTAAGACGACAGATTTTGATATTCTTTATAATGAAGG
TATTTCGCGCGAAAGCGAGATTATTAACCTTGGGGCTCAACTGGGTCTAATTGAAAAATCAGGTGCCTGGTACAGTTATA
AACAGGAAAAAATTGGCCAGGGGAAAGACAACGTTCGTCTATACCTCAAAGAAAACCCTCAAGTGGCCCAAGTATTGGAA
CAACAAATCAGAGCGGAGTTGCTGGTTAAAAAATTACCAGTAAATGCTGAGGCGGAAGAGACACTTGAGAGCGTGGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.027

94.813

0.749
  recA Acinetobacter baylyi ADP1

71.387

99.712

0.712
  recA Ralstonia pseudosolanacearum GMI1000

69.602

100

0.706
  recA Glaesserella parasuis strain SC1401

74.462

93.66

0.697
  recA Acinetobacter baumannii D1279779

72.866

94.524

0.689
  recA Vibrio cholerae strain A1552

72.561

94.524

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.561

94.524

0.686
  recA Neisseria gonorrhoeae strain FA1090

72.615

93.66

0.68
  recA Neisseria gonorrhoeae MS11

72.615

93.66

0.68
  recA Neisseria gonorrhoeae MS11

72.615

93.66

0.68
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

98.271

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

95.965

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

92.507

0.599
  recA Helicobacter pylori 26695

62.462

93.66

0.585
  recA Helicobacter pylori strain NCTC11637

62.462

93.66

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

59.94

95.677

0.573
  recA Streptococcus pneumoniae Rx1

60.55

94.236

0.571
  recA Streptococcus mitis SK321

60.55

94.236

0.571
  recA Streptococcus pneumoniae D39

60.55

94.236

0.571
  recA Streptococcus pneumoniae R6

60.55

94.236

0.571
  recA Streptococcus pneumoniae TIGR4

60.55

94.236

0.571
  recA Streptococcus mitis NCTC 12261

60.245

94.236

0.568
  recA Streptococcus mutans UA159

59.756

94.524

0.565
  recA Streptococcus pyogenes NZ131

59.271

94.813

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

93.66

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.769

93.66

0.55

Multiple sequence alignment