Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL199_RS01050 Genome accession   NZ_LR134365
Coordinates   237927..239018 (-) Length   363 a.a.
NCBI ID   WP_004141173.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain NCTC10426     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232927..244018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL199_RS01030 (NCTC10426_00199) acpS 233212..233586 (-) 375 WP_004141177.1 holo-ACP synthase -
  EL199_RS01035 (NCTC10426_00200) - 233646..234863 (-) 1218 WP_004141176.1 aspartate kinase -
  EL199_RS01040 (NCTC10426_00201) alaS 234874..237504 (-) 2631 WP_004141175.1 alanine--tRNA ligase -
  EL199_RS01045 (NCTC10426_00202) - 237494..237940 (-) 447 WP_004141174.1 regulatory protein RecX -
  EL199_RS01050 (NCTC10426_00203) recA 237927..239018 (-) 1092 WP_004141173.1 recombinase RecA Machinery gene
  EL199_RS01055 (NCTC10426_00204) - 239040..239936 (-) 897 WP_126315949.1 M48 family metallopeptidase -
  EL199_RS01060 (NCTC10426_00205) - 239983..240777 (-) 795 WP_004141170.1 ABC transporter permease -
  EL199_RS01065 (NCTC10426_00206) - 240774..241538 (-) 765 WP_004141169.1 ABC transporter ATP-binding protein -
  EL199_RS01070 (NCTC10426_00207) - 241538..242518 (-) 981 WP_004141168.1 ABC transporter substrate-binding protein -
  EL199_RS01075 (NCTC10426_00208) - 242666..243223 (+) 558 WP_004141167.1 RNA 2'-phosphotransferase -
  EL199_RS01080 (NCTC10426_00209) vapC 243497..243898 (-) 402 WP_004141166.1 tRNA(fMet)-specific endonuclease VapC -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38975.31 Da        Isoelectric Point: 5.1791

>NTDB_id=1122311 EL199_RS01050 WP_004141173.1 237927..239018(-) (recA) [Cardiobacterium hominis strain NCTC10426]
MSKQISEEQEKALKAVLAQLDKQFGKGTVMRLGDQTTEHDIQAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLT
LHVIAEAQKAGGTAAFIDAEHALDPIYARKLGVNTDDLYITQPDTGEQALEIADALVRSGAFSVIVIDSVAALTPKAEIE
GEMGDSHVGLQARLMSQALRKLTANIKRANTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEGDE
VLGNQTRVKVVKNKVSPPFKQAEFDVLYGQGISRIGEIIDLGVAIDVIQKSGAWYSYGSDKIGQGKEKVRAYLTEKPELA
AEIEAKIREHYIGNAHAELPVSKDSGDDAEASEAPVTDGNELF

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1122311 EL199_RS01050 WP_004141173.1 237927..239018(-) (recA) [Cardiobacterium hominis strain NCTC10426]
ATGAGCAAACAAATCTCGGAAGAACAGGAAAAAGCGCTGAAAGCGGTGCTGGCACAGCTGGACAAACAATTCGGCAAAGG
CACGGTGATGCGTCTTGGCGACCAGACCACCGAACACGACATTCAGGCCATCTCTACCGGCTCTTTGGGGCTGGACATCG
CGCTCGGCATCGGCGGCCTGCCGCGCGGGCGCATCGTCGAAATCTACGGCCCGGAATCTTCCGGCAAGACGACGCTCACC
TTGCACGTCATCGCCGAAGCGCAAAAAGCAGGCGGCACGGCCGCCTTTATTGATGCCGAACACGCCCTCGACCCGATTTA
CGCGCGCAAACTCGGCGTCAATACCGACGACCTCTACATCACCCAACCCGACACCGGCGAACAGGCGCTGGAAATCGCCG
ACGCCTTGGTGCGCTCCGGTGCGTTCAGCGTCATCGTCATTGACTCCGTCGCCGCCCTCACGCCCAAAGCGGAAATCGAA
GGCGAAATGGGCGACTCGCACGTTGGCCTGCAAGCGCGGCTGATGAGCCAGGCGCTGCGCAAACTCACCGCCAACATCAA
GCGCGCCAACACGCTGGTCATCTTCATCAACCAAATCCGCATGAAAATCGGCGTGATGTTCGGCTCGCCGGAAACCACCA
CCGGCGGTAACGCGCTCAAGTTCTACGCCTCAGTGCGCCTCGACATCCGCCGCATCGGCTCCGTTAAGGAAGGCGATGAA
GTACTGGGCAACCAAACCCGCGTCAAAGTGGTGAAAAACAAAGTATCGCCGCCCTTCAAACAGGCAGAATTTGACGTCCT
CTACGGTCAGGGCATCTCGCGCATCGGCGAAATCATTGACCTCGGCGTGGCGATTGACGTCATCCAGAAATCCGGCGCTT
GGTACAGCTACGGCAGCGACAAAATCGGCCAAGGCAAAGAAAAAGTCCGCGCCTATCTCACCGAAAAACCGGAACTTGCC
GCCGAAATCGAAGCCAAAATCCGTGAACACTACATCGGCAACGCCCATGCCGAACTGCCGGTAAGCAAAGATAGCGGTGA
CGACGCAGAGGCCAGCGAAGCCCCCGTCACGGACGGCAATGAGCTCTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.92

96.143

0.691
  recA Glaesserella parasuis strain SC1401

68.555

97.245

0.667
  recA Acinetobacter baylyi ADP1

71.601

91.185

0.653
  recA Ralstonia pseudosolanacearum GMI1000

75.563

85.675

0.647
  recA Acinetobacter baumannii D1279779

71.646

90.358

0.647
  recA Vibrio cholerae strain A1552

66.477

96.97

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.477

96.97

0.645
  recA Neisseria gonorrhoeae MS11

71.605

89.256

0.639
  recA Neisseria gonorrhoeae strain FA1090

71.605

89.256

0.639
  recA Neisseria gonorrhoeae MS11

71.605

89.256

0.639
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.173

90.634

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.385

89.532

0.603
  recA Helicobacter pylori 26695

61.96

95.592

0.592
  recA Helicobacter pylori strain NCTC11637

61.96

95.592

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

63.889

89.256

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

60.588

93.664

0.567
  recA Streptococcus pneumoniae R6

54.96

100

0.565
  recA Streptococcus pneumoniae Rx1

54.96

100

0.565
  recA Streptococcus pneumoniae D39

54.96

100

0.565
  recA Streptococcus pneumoniae TIGR4

54.96

100

0.565
  recA Streptococcus pyogenes NZ131

59.104

92.287

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

88.981

0.543
  recA Streptococcus mitis SK321

58.806

92.287

0.543
  recA Streptococcus mitis NCTC 12261

58.507

92.287

0.54
  recA Streptococcus mutans UA159

58.209

92.287

0.537
  recA Lactococcus lactis subsp. cremoris KW2

58.133

91.46

0.532

Multiple sequence alignment