Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL167_RS07720 Genome accession   NZ_LR134360
Coordinates   1652730..1653797 (-) Length   355 a.a.
NCBI ID   WP_047131214.1    Uniprot ID   A0A143P8R3
Organism   Staphylococcus condimenti strain NCTC13827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647730..1658797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL167_RS07700 (NCTC13827_01593) - 1648143..1648361 (+) 219 WP_047131210.1 hypothetical protein -
  EL167_RS07705 (NCTC13827_01594) - 1648424..1649248 (-) 825 WP_047131211.1 LysR family transcriptional regulator -
  EL167_RS07710 (NCTC13827_01595) - 1649370..1650362 (+) 993 WP_047131212.1 YeiH family protein -
  EL167_RS07715 (NCTC13827_01596) rny 1650896..1652455 (-) 1560 WP_047131213.1 ribonuclease Y -
  EL167_RS07720 (NCTC13827_01597) recA 1652730..1653797 (-) 1068 WP_047131214.1 recombinase RecA Machinery gene
  EL167_RS07725 (NCTC13827_01598) - 1653969..1655111 (-) 1143 WP_047131215.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EL167_RS07730 (NCTC13827_01599) pgsA 1655260..1655841 (-) 582 WP_047131216.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL167_RS07735 (NCTC13827_01600) - 1655872..1656270 (-) 399 WP_047131217.1 RodZ family helix-turn-helix domain-containing protein -
  EL167_RS07740 (NCTC13827_01601) - 1656292..1657131 (-) 840 WP_047131218.1 DUF3388 domain-containing protein -
  EL167_RS07745 (NCTC13827_01602) ymfI 1657260..1657967 (-) 708 WP_047131219.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38693.67 Da        Isoelectric Point: 5.0231

>NTDB_id=1122258 EL167_RS07720 WP_047131214.1 1652730..1653797(-) (recA) [Staphylococcus condimenti strain NCTC13827]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSISSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPEIKQDIDN
KLRQKLGIFDGDVEEKDEKQAEAEKNENTNLFDEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1122258 EL167_RS07720 WP_047131214.1 1652730..1653797(-) (recA) [Staphylococcus condimenti strain NCTC13827]
TTGGATAATGAACGTCAAAAAGCGCTAGATACTGTCATTAAGAATATGGAGAAATCGTTTGGTAAAGGTGCAGTTATGAA
ATTAGGCGACAATAAAGCACGTCGCGTTTCAAGTATCTCAAGCGGTTCTGTAACATTAGATAACGCTTTAGGTGTCGGTG
GATACCCTAAAGGAAGAATTGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACTACTGTAGCTTTACATGCTATTGCT
GAAGTACAAAAACAAGGCGGAGTTGCAGCATTTATCGATGCTGAACATGCATTAGACCCTGTTTATGCTGAAGCATTAGG
TGTAGATATCGATAACTTATATTTATCTCAACCAGATCATGGTGAACAAGGTTTAGAAATTGCTGAAGCATTTGTTCGAA
GCGGTGCTGTAGATATTATTGTTGTCGATTCAGTAGCAGCTTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCACGTTTAATGTCTCAAGCATTACGTAAACTTTCTGGGGCCATTTCTAAATCAAATTGTAC
TGCTGTTTTCATCAACCAAATCCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACAACTCCTGGAGGTAGAGCAT
TAAAATTCTACAGTTCAGTCCGTTTAGAAGTACGTCGTGCTGAGCAGTTGAAACAAGGTCAGGAAATTGTTGGTAACCGT
ACTAAAATTAAAGTTGTTAAAAACAAAGTAGCACCTCCGTTCAGAGTAGCTGAAGTTGATATCATGTATGGACAAGGTAT
TTCTAAAGAAGGCGAATTAATCGACTTAGGTGTTGAAAATGATATCGTTGACAAATCAGGTGCTTGGTATTCATATAATG
GAGACAGAATGGGACAAGGTAAAGAAAACGTCAAAAATTATTTGAAAGAGCATCCTGAAATTAAACAAGATATCGATAAT
AAATTAAGACAAAAGCTAGGTATTTTCGATGGCGATGTTGAAGAAAAAGATGAAAAACAAGCTGAAGCAGAGAAAAATGA
AAATACAAATTTATTTGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143P8R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.153

91.831

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

70.262

96.62

0.679
  recA Streptococcus pneumoniae D39

64.407

99.718

0.642
  recA Streptococcus pneumoniae TIGR4

64.407

99.718

0.642
  recA Streptococcus pneumoniae Rx1

64.407

99.718

0.642
  recA Streptococcus pneumoniae R6

64.407

99.718

0.642
  recA Streptococcus mutans UA159

63.92

99.155

0.634
  recA Streptococcus mitis NCTC 12261

63.248

98.873

0.625
  recA Streptococcus mitis SK321

63.506

98.028

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.689

97.746

0.623
  recA Neisseria gonorrhoeae MS11

63.689

97.746

0.623
  recA Neisseria gonorrhoeae MS11

63.689

97.746

0.623
  recA Streptococcus pyogenes NZ131

67.173

92.676

0.623
  recA Acinetobacter baylyi ADP1

62.323

99.437

0.62
  recA Lactococcus lactis subsp. cremoris KW2

65.559

93.239

0.611
  recA Vibrio cholerae strain A1552

66.564

91.831

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.564

91.831

0.611
  recA Acinetobacter baumannii D1279779

62.791

96.901

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

92.676

0.608
  recA Helicobacter pylori 26695

63.415

92.394

0.586
  recA Helicobacter pylori strain NCTC11637

63.11

92.394

0.583
  recA Pseudomonas stutzeri DSM 10701

63.497

91.831

0.583
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.169

0.58
  recA Glaesserella parasuis strain SC1401

62.539

90.986

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.239

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.141

0.541

Multiple sequence alignment