Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL116_RS06350 Genome accession   NZ_LR134304
Coordinates   1286965..1288008 (+) Length   347 a.a.
NCBI ID   WP_047528892.1    Uniprot ID   A0A2K4AE05
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1281965..1293008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS06325 (NCTC13712_01225) ymfI 1282742..1283446 (+) 705 WP_047549496.1 elongation factor P 5-aminopentanone reductase -
  EL116_RS06330 (NCTC13712_01226) - 1283554..1284381 (+) 828 WP_031786956.1 DUF3388 domain-containing protein -
  EL116_RS06335 (NCTC13712_01227) - 1284406..1284798 (+) 393 WP_047425202.1 helix-turn-helix domain-containing protein -
  EL116_RS06340 (NCTC13712_01228) pgsA 1284830..1285408 (+) 579 WP_047425205.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL116_RS06345 (NCTC13712_01229) - 1285649..1286800 (+) 1152 WP_047549493.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EL116_RS06350 (NCTC13712_01230) recA 1286965..1288008 (+) 1044 WP_047528892.1 recombinase RecA Machinery gene
  EL116_RS06355 (NCTC13712_01231) rny 1288502..1290061 (+) 1560 WP_047425215.1 ribonuclease Y -
  EL116_RS06360 (NCTC13712_01232) - 1290255..1290470 (-) 216 WP_000026306.1 hypothetical protein -
  EL116_RS06365 (NCTC13712_01233) - 1290644..1291435 (+) 792 WP_047549490.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37668.58 Da        Isoelectric Point: 4.8544

>NTDB_id=1120773 EL116_RS06350 WP_047528892.1 1286965..1288008(+) (recA) [Staphylococcus schweitzeri strain NCTC13712]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEEVEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1120773 EL116_RS06350 WP_047528892.1 1286965..1288008(+) (recA) [Staphylococcus schweitzeri strain NCTC13712]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTGATGAA
GTTAGGCGATAATATAGGTCGTCGAGTTTCTACAACATCAACTGGATCAGTTACACTTGATAACGCATTAGGCGTAGGTG
GCTATCCAAAAGGGCGAATTATTGAAATATATGGACCTGAAAGTTCTGGTAAGACAACAGTAGCACTTCATGCTATTGCA
GAAGTGCAAAGTAATGGAGGAGTTGCTGCATTTATCGATGCCGAACATGCATTAGATCCAGAATATGCACAAGCTTTAGG
GGTAGATATTGATAATTTGTACTTATCTCAACCTGACCATGGTGAACAAGGGCTTGAAATCGCAGAAGCATTTGTTAGAA
GTGGTGCGGTAGATATCGTAGTTGTAGACTCTGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTCGGTTTACAAGCACGTTTAATGTCACAAGCATTACGTAAACTATCTGGTGCTATCTCTAAATCAAACACGAC
TGCTATTTTTATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTTGGGAATCCAGAGACTACACCTGGTGGACGCGCAC
TAAAATTCTATAGCTCAGTTAGATTAGAAGTACGCCGTGCAGAACAACTTAAACAAGGTCAAGAAATAGTTGGTAATAGA
ACAAAGATTAAAGTTGTTAAAAATAAAGTAGCACCTCCATTTAGAGTGGCAGAAGTTGATATTATGTATGGCCAAGGTAT
TTCTAAAGAAGGTGAACTTATTGATTTAGGTGTTGAAAATGACATCGTTGATAAGTCTGGTGCTTGGTACTCATATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAATGTTAAAATGTACTTGAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAGTTACGAGAAAAACTTGGAATTTCTGATGGTGATGTTGAAGAGGTTGAAGACGCGCCAAAATCTTTATTTGATGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4AE05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.133

95.389

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

70.588

97.983

0.692
  recA Streptococcus pneumoniae TIGR4

65.23

100

0.654
  recA Streptococcus pneumoniae D39

65.23

100

0.654
  recA Streptococcus pneumoniae R6

65.23

100

0.654
  recA Streptococcus pneumoniae Rx1

65.23

100

0.654
  recA Streptococcus pyogenes NZ131

68.693

94.813

0.651
  recA Streptococcus mutans UA159

64.286

100

0.648
  recA Streptococcus mitis SK321

64.841

100

0.648
  recA Streptococcus mitis NCTC 12261

65.497

98.559

0.646
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Acinetobacter baumannii D1279779

66.871

93.948

0.628
  recA Neisseria gonorrhoeae strain FA1090

65.957

94.813

0.625
  recA Neisseria gonorrhoeae MS11

65.957

94.813

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94.813

0.625
  recA Neisseria gonorrhoeae MS11

65.957

94.813

0.625
  recA Helicobacter pylori 26695

63.343

98.271

0.622
  recA Helicobacter pylori strain NCTC11637

63.343

98.271

0.622
  recA Vibrio cholerae strain A1552

65.644

93.948

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

93.948

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.605

90.49

0.594
  recA Pseudomonas stutzeri DSM 10701

61.078

96.254

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.389

0.579
  recA Glaesserella parasuis strain SC1401

60.494

93.372

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.931

0.565

Multiple sequence alignment