Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL098_RS03970 Genome accession   NZ_LR134201
Coordinates   794386..795450 (+) Length   354 a.a.
NCBI ID   WP_126354955.1    Uniprot ID   A0A3S4JX58
Organism   Cedecea lapagei strain NCTC11466     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789386..800450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL098_RS03945 (NCTC11466_00791) mltB 789857..790933 (+) 1077 WP_126354947.1 lytic murein transglycosylase B -
  EL098_RS03950 (NCTC11466_00792) - 791206..791901 (+) 696 WP_126354949.1 metal ABC transporter ATP-binding protein -
  EL098_RS03955 (NCTC11466_00793) - 791898..792782 (+) 885 WP_126354951.1 metal ABC transporter permease -
  EL098_RS03960 (NCTC11466_00794) - 792779..793657 (+) 879 WP_126354953.1 metal ABC transporter substrate-binding protein -
  EL098_RS03965 (NCTC11466_00795) pncC 793791..794300 (+) 510 WP_126358348.1 nicotinamide-nucleotide amidase -
  EL098_RS03970 (NCTC11466_00796) recA 794386..795450 (+) 1065 WP_126354955.1 recombinase RecA Machinery gene
  EL098_RS03975 (NCTC11466_00797) - 795526..796041 (+) 516 WP_126354957.1 regulatory protein RecX -
  EL098_RS03980 (NCTC11466_00798) alaS 796181..798808 (+) 2628 WP_126354959.1 alanine--tRNA ligase -
  EL098_RS03985 (NCTC11466_00799) csrA 799054..799239 (+) 186 WP_008458257.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38173.56 Da        Isoelectric Point: 4.8780

>NTDB_id=1118917 EL098_RS03970 WP_126354955.1 794386..795450(+) (recA) [Cedecea lapagei strain NCTC11466]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRVVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANASNFLKENKPMAEEI
EKKLREMLLNNQDSTPDFTVDDHDADAVETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1118917 EL098_RS03970 WP_126354955.1 794386..795450(+) (recA) [Cedecea lapagei strain NCTC11466]
ATGGCTATCGACGAAAACAAACAGAAGGCGTTAGCGGCAGCACTGGGCCAGATTGAAAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACGATCTCTACCGGTTCACTTTCACTGGACATCGCGCTGGGCG
CGGGCGGCCTGCCGATGGGCCGTGTCGTAGAAATCTACGGGCCTGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTT
ATCGCCGCCGCGCAGCGCAGCGGTAAAACCTGTGCGTTTATCGATGCCGAACACGCGCTGGACCCGGTCTACGCCAAGAA
GCTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CACGCTCCGGTGCGGTTGACGTCATTATCGTCGACTCCGTTGCGGCACTGACGCCGAAGGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACTACCGGCGGTA
ACGCGCTGAAGTTCTATGCCTCTGTGCGCCTCGACATTCGTCGCATCGGTGCGGTGAAAGATGGCGAAAACGTCGTCGGC
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATTGCAGCACCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATTGAGAAAGCGGGTGCATGGTACAGCT
ACAACGGCGAAAAAATCGGACAGGGCAAGGCAAACGCCAGCAACTTCCTGAAAGAGAACAAGCCAATGGCTGAAGAAATC
GAGAAGAAACTGCGCGAAATGCTGCTGAATAACCAGGACAGCACGCCAGACTTCACGGTAGATGACCACGACGCAGACGC
GGTTGAAACCAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4JX58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.503

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.503

0.788
  recA Pseudomonas stutzeri DSM 10701

72.174

97.458

0.703
  recA Acinetobacter baylyi ADP1

70.145

97.458

0.684
  recA Acinetobacter baumannii D1279779

74.006

92.373

0.684
  recA Glaesserella parasuis strain SC1401

68.805

96.893

0.667
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Neisseria gonorrhoeae MS11

67.791

92.09

0.624
  recA Neisseria gonorrhoeae MS11

67.791

92.09

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.791

92.09

0.624
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

94.068

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus mutans UA159

60.923

91.808

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

91.808

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.678

0.542

Multiple sequence alignment