Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ELZ61_RS01935 Genome accession   NZ_LR134167
Coordinates   393242..394309 (+) Length   355 a.a.
NCBI ID   WP_126373540.1    Uniprot ID   -
Organism   Avibacterium volantium strain NCTC3438     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 388242..399309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS01925 (NCTC3438_00391) - 388409..391801 (-) 3393 WP_126371057.1 autotransporter outer membrane beta-barrel domain-containing protein -
  ELZ61_RS01930 (NCTC3438_00392) - 391824..392867 (-) 1044 WP_126371059.1 outer membrane beta-barrel protein -
  ELZ61_RS01935 (NCTC3438_00393) recA 393242..394309 (+) 1068 WP_126373540.1 recombinase RecA Machinery gene
  ELZ61_RS01940 (NCTC3438_00394) recX 394396..394854 (+) 459 WP_126371061.1 recombination regulator RecX -
  ELZ61_RS01945 (NCTC3438_00395) proS 394996..396711 (+) 1716 WP_126371063.1 proline--tRNA ligase -
  ELZ61_RS01950 (NCTC3438_00397) - 397019..397645 (+) 627 WP_197717465.1 carbonic anhydrase family protein -
  ELZ61_RS01955 (NCTC3438_00398) trmB 397813..398565 (+) 753 WP_103855687.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ELZ61_RS01960 (NCTC3438_00399) - 398596..398934 (+) 339 WP_103855688.1 YggL family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38361.86 Da        Isoelectric Point: 4.6621

>NTDB_id=1118637 ELZ61_RS01935 WP_126373540.1 393242..394309(+) (recA) [Avibacterium volantium strain NCTC3438]
MTTQEEKQKALAAALGQIEKQFGKGSIMKLGETQDLDIESISTGSLGLDIALGIGGLPMGRIVEIYGPESSGKTTLTLSV
IAQAQKLGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEEALEICDALVRSGAIDVVIVDSVAALTPKAEIEGDM
GDAHVGLQARLMSQALRKLTGQIKNSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGAVKNGDEIIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVDKSGAWFSYNGEKIGQGKANAMKWLAEHPEQAEEL
ENKLREELLANPDKSLIADIEADQNEDIAEMDSEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1118637 ELZ61_RS01935 WP_126373540.1 393242..394309(+) (recA) [Avibacterium volantium strain NCTC3438]
ATTACCACTCAAGAAGAAAAACAAAAAGCTCTTGCTGCGGCGTTAGGTCAAATTGAAAAACAATTTGGTAAAGGTTCAAT
TATGAAATTGGGGGAAACCCAAGATTTGGACATTGAATCTATTTCCACAGGTTCACTGGGGTTAGACATTGCCTTGGGTA
TCGGTGGTTTGCCAATGGGACGTATCGTAGAAATTTACGGGCCAGAATCTTCAGGGAAAACCACATTAACCCTTTCTGTT
ATTGCACAAGCACAAAAATTAGGCAAAACCTGTGCCTTTATTGATGCAGAACACGCCTTAGATCCAATTTATGCGGCAAA
ACTTGGTGTTGATGTCAAAGAATTGCTTGTTTCTCAGCCTGACAACGGTGAAGAAGCATTAGAAATTTGTGATGCCTTAG
TTCGTTCTGGCGCGATTGACGTGGTGATTGTGGACTCTGTAGCCGCCCTTACGCCAAAAGCAGAAATTGAAGGGGATATG
GGTGATGCACACGTTGGTTTACAAGCGCGTTTAATGTCGCAAGCCTTGCGCAAGCTCACTGGACAAATCAAAAACTCAAA
CTGCTTGGTGATTTTCATCAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAACCCAGAGACCACCACTGGCGGTA
ACGCATTGAAATTCTATTCTTCAGTGCGTTTAGATATTCGCCGTGTAGGTGCAGTGAAAAACGGCGACGAAATCATTGGT
AATGAAACTCGTGTGAAAGTGGTGAAAAACAAAGTTGCCCCACCATTCCGTCAAGTTGATTTCCAAATTCTTTACGGTGA
AGGCATTTCACGCAATGGTGAATTAATTGAATTGGGTGTAAAACATAAACTAGTTGATAAATCAGGCGCGTGGTTCTCTT
ATAACGGTGAAAAAATAGGTCAAGGCAAAGCCAATGCAATGAAATGGTTAGCTGAACACCCTGAACAAGCCGAAGAATTA
GAAAATAAATTACGCGAAGAGCTTTTAGCAAATCCAGACAAATCTCTCATTGCCGATATTGAAGCGGATCAAAATGAAGA
CATTGCAGAAATGGATTCTGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.068

98.873

0.752
  recA Pseudomonas stutzeri DSM 10701

74.359

98.873

0.735
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.821

94.366

0.715
  recA Vibrio cholerae strain A1552

75.821

94.366

0.715
  recA Acinetobacter baylyi ADP1

69.075

97.465

0.673
  recA Neisseria gonorrhoeae strain FA1090

73.913

90.704

0.67
  recA Neisseria gonorrhoeae MS11

73.913

90.704

0.67
  recA Neisseria gonorrhoeae MS11

73.913

90.704

0.67
  recA Acinetobacter baumannii D1279779

72

91.549

0.659
  recA Ralstonia pseudosolanacearum GMI1000

73.333

88.732

0.651
  recA Helicobacter pylori strain NCTC11637

62.682

96.62

0.606
  recA Helicobacter pylori 26695

62.682

96.62

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.284

94.366

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.923

91.549

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

64.596

90.704

0.586
  recA Streptococcus mutans UA159

61.231

91.549

0.561
  recA Streptococcus pneumoniae D39

60.856

92.113

0.561
  recA Streptococcus pneumoniae TIGR4

60.856

92.113

0.561
  recA Streptococcus pneumoniae Rx1

60.856

92.113

0.561
  recA Streptococcus pneumoniae R6

60.856

92.113

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.491

90.704

0.558
  recA Streptococcus pyogenes NZ131

60.923

91.549

0.558
  recA Streptococcus mitis NCTC 12261

60.802

91.268

0.555
  recA Streptococcus mitis SK321

60.802

91.268

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

91.268

0.555
  recA Lactococcus lactis subsp. cremoris KW2

58.333

91.268

0.532

Multiple sequence alignment