Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL051_RS16690 Genome accession   NZ_LR134164
Coordinates   3499546..3500604 (-) Length   352 a.a.
NCBI ID   WP_022649140.1    Uniprot ID   A0A330DB80
Organism   Enterobacter hormaechei strain NCTC11571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3494546..3505604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL051_RS16675 (NCTC11571_03334) csrA 3495792..3495976 (-) 185 Protein_3223 carbon storage regulator CsrA -
  EL051_RS16680 (NCTC11571_03335) alaS 3496218..3498845 (-) 2628 WP_022649139.1 alanine--tRNA ligase -
  EL051_RS16685 (NCTC11571_03336) recX 3498977..3499477 (-) 501 WP_063137602.1 recombination regulator RecX -
  EL051_RS16690 (NCTC11571_03337) recA 3499546..3500604 (-) 1059 WP_022649140.1 recombinase RecA Machinery gene
  EL051_RS16695 (NCTC11571_03338) pncC 3500694..3501191 (-) 498 WP_003862172.1 nicotinamide-nucleotide amidase -
  EL051_RS16700 (NCTC11571_03339) - 3501322..3502200 (-) 879 WP_126315119.1 metal ABC transporter substrate-binding protein -
  EL051_RS16705 (NCTC11571_03340) - 3502215..3503075 (-) 861 WP_022649142.1 metal ABC transporter permease -
  EL051_RS16710 (NCTC11571_03341) - 3503072..3503725 (-) 654 WP_023298453.1 ATP-binding cassette domain-containing protein -
  EL051_RS16715 (NCTC11571_03343) mltB 3504036..3505136 (-) 1101 WP_022649145.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37777.21 Da        Isoelectric Point: 4.8095

>NTDB_id=1118552 EL051_RS16690 WP_022649140.1 3499546..3500604(-) (recA) [Enterobacter hormaechei strain NCTC11571]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1118552 EL051_RS16690 WP_022649140.1 3499546..3500604(-) (recA) [Enterobacter hormaechei strain NCTC11571]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACCACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCACAGCCGGACACCGGCGAGCAGGCCCTGGAAATTTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCGGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGATAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAGCAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A330DB80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

94.034

0.79
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

94.034

0.79
  recA Pseudomonas stutzeri DSM 10701

73.121

98.295

0.719
  recA Acinetobacter baumannii D1279779

74.695

93.182

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.253

98.864

0.685
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

92.045

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

94.318

0.557

Multiple sequence alignment