Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LBH_RS03085 Genome accession   NZ_CP002427
Coordinates   592392..593489 (+) Length   365 a.a.
NCBI ID   WP_003633420.1    Uniprot ID   A0AAV4E830
Organism   Lactobacillus helveticus H9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 587392..598489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBH_RS03065 (LBH_0567) - 588448..589704 (+) 1257 WP_025283401.1 M16 family metallopeptidase -
  LBH_RS03070 (LBH_0568) ymfI 589705..590433 (+) 729 WP_025283402.1 elongation factor P 5-aminopentanone reductase -
  LBH_RS03075 (LBH_0569) - 590501..591625 (+) 1125 WP_025283403.1 helix-turn-helix domain-containing protein -
  LBH_RS03080 (LBH_0570) pgsA 591648..592208 (+) 561 WP_003626003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LBH_RS03085 (LBH_0571) recA 592392..593489 (+) 1098 WP_003633420.1 recombinase RecA Machinery gene
  LBH_RS03090 (LBH_0572) rny 593610..595241 (+) 1632 WP_003626007.1 ribonuclease Y -
  LBH_RS03095 (LBH_0573) - 595348..596505 (+) 1158 WP_025283404.1 glycosyltransferase family 4 protein -
  LBH_RS03100 (LBH_0574) - 596532..597194 (-) 663 WP_014563946.1 YigZ family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39526.08 Da        Isoelectric Point: 7.3154

>NTDB_id=111635 LBH_RS03085 WP_003633420.1 592392..593489(+) (recA) [Lactobacillus helveticus H9]
MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMIGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEDHPDIYQDIQ
QQVRQAYGIDEKSVADREDPEKIKKKREEAKAEKTAETKKATDDK

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=111635 LBH_RS03085 WP_003633420.1 592392..593489(+) (recA) [Lactobacillus helveticus H9]
ATGGCCAAAGATGAAAAAAAGGCTGCTTTAGATGCAGCGCTCAAAAAAATCGAAAAGAACTTTGGTAAGGGTGCTGTTAT
GCGTATGGGTGAAAAAGCTGATACCCAAATTTCAACAGTTCCAACAGGTTCACTTGCTTTAGATGCTGCTATTGGTGTTG
GCGGCTATCCTCGAGGACGTATTATTGAAGTATATGGACCTGAATCATCTGGTAAAACCACTGTTGCTCTTCATGCAGTA
GCTGAAGTACAAAAACGTGGTGGTACAGCCGCTTATATTGATGCAGAAAATGCAATGGATCCAGCATATGCTGAAGCATT
AGGTGTAGACATTGATTCACTTATTTTATCTCAACCTAATACAGGTGAAGAAGGTTTACAAATTGCTGATACTTTGATTT
CTAGTGGTGCCATTGATATTGTGGTAGTTGACTCTGTTGCAGCGTTAGTTCCACGTGCTGAAATTGAAGGCGAGATGGGG
GATGCTCATGTTGGTCTTCAAGCTCGATTAATGAGTCAGGCTTTGCGTAAATTATCTGGTACTATTTCAAAGACTAAGAC
CATTGCAATTTTTATTAATCAGATTCGTGAAAAAGTTGGGATTATGTTTGGTAACCCAGAAACTACTCCAGGTGGTCGTG
CTCTTAAGTTTTATTCAACTATTCGACTTGAAGTAAGAAGAGCAGAACAGATCAAGCAATCTGGTGATATGATTGGTAAC
CGTGTCAAGATTAAAGTAGTGAAGAACAAGGTTGCTCCACCATTTAAGGTGGCTGAAGTAGATATCATGTATGGTAAAGG
TATTTCCCAAAGTGGAGAATTGCTTGATATGGCCGCTGACAAGGATATTATTGATAAAGCTGGATCATGGTATTCATACA
AGAGTGATCGGATCGGTCAAGGACGAGAAAATGCTAAGAAATATCTTGAAGATCATCCAGATATCTATCAAGATATTCAA
CAACAAGTTCGTCAAGCATACGGCATTGATGAAAAATCAGTAGCTGATCGTGAGGATCCTGAAAAAATAAAGAAAAAACG
CGAAGAAGCAAAAGCAGAGAAGACTGCAGAAACTAAAAAGGCAACTGATGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.873

90.685

0.742
  recA Bacillus subtilis subsp. subtilis str. 168

72.424

90.411

0.655
  recA Streptococcus mutans UA159

66.292

97.534

0.647
  recA Streptococcus pneumoniae D39

65.826

97.808

0.644
  recA Streptococcus pneumoniae Rx1

65.826

97.808

0.644
  recA Streptococcus pneumoniae R6

65.826

97.808

0.644
  recA Streptococcus pneumoniae TIGR4

65.826

97.808

0.644
  recA Streptococcus mitis NCTC 12261

67.251

93.699

0.63
  recA Streptococcus pyogenes NZ131

69.301

90.137

0.625
  recA Streptococcus mitis SK321

68.389

90.137

0.616
  recA Lactococcus lactis subsp. cremoris KW2

65.476

92.055

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

89.863

0.54
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.522

92.877

0.534
  recA Neisseria gonorrhoeae MS11

59.451

89.863

0.534
  recA Neisseria gonorrhoeae MS11

59.451

89.863

0.534
  recA Neisseria gonorrhoeae strain FA1090

59.451

89.863

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

88.493

0.526
  recA Acinetobacter baumannii D1279779

59.133

88.493

0.523
  recA Helicobacter pylori 26695

55.556

93.699

0.521
  recA Helicobacter pylori strain NCTC11637

55.556

93.699

0.521
  recA Acinetobacter baylyi ADP1

59.006

88.219

0.521
  recA Pseudomonas stutzeri DSM 10701

58.567

87.945

0.515
  recA Glaesserella parasuis strain SC1401

53.276

96.164

0.512
  recA Ralstonia pseudosolanacearum GMI1000

57.827

85.753

0.496
  recA Vibrio cholerae O1 biovar El Tor strain E7946

55.59

88.219

0.49
  recA Vibrio cholerae strain A1552

55.59

88.219

0.49

Multiple sequence alignment