Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BN2458_RS07390 Genome accession   NZ_LN907858
Coordinates   1492025..1493065 (-) Length   346 a.a.
NCBI ID   WP_034327000.1    Uniprot ID   A0A4V6HZX0
Organism   Helicobacter typhlonius strain MIT 97-6810 isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487025..1498065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN2458_RS07360 (BN2458_PEG1641) - 1487198..1488160 (-) 963 WP_034327011.1 Gfo/Idh/MocA family protein -
  BN2458_RS07365 (BN2458_PEG1642) - 1488153..1489247 (-) 1095 WP_034327009.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  BN2458_RS07370 (BN2458_PEG1643) - 1489324..1489827 (-) 504 WP_034327020.1 shikimate kinase -
  BN2458_RS07375 (BN2458_PEG1644) - 1489831..1490445 (-) 615 WP_034327006.1 AMIN domain-containing protein -
  BN2458_RS07380 (BN2458_PEG1645) - 1490420..1490704 (-) 285 WP_034327004.1 hypothetical protein -
  BN2458_RS07385 (BN2458_PEG1646) eno 1490729..1492006 (-) 1278 WP_034327002.1 phosphopyruvate hydratase -
  BN2458_RS07390 (BN2458_PEG1647) recA 1492025..1493065 (-) 1041 WP_034327000.1 recombinase RecA Machinery gene
  BN2458_RS07395 (BN2458_PEG1648) - 1493164..1494021 (+) 858 WP_034326998.1 menaquinone biosynthesis family protein -
  BN2458_RS07400 (BN2458_PEG1649) - 1494072..1494398 (+) 327 WP_231944758.1 hypothetical protein -
  BN2458_RS07405 (BN2458_PEG1650) - 1494463..1496157 (+) 1695 WP_231944759.1 LTA synthase family protein -
  BN2458_RS07410 (BN2458_PEG1651) - 1496254..1496820 (-) 567 WP_034326996.1 thiamine phosphate synthase -
  BN2458_RS07415 (BN2458_PEG1652) - 1496807..1497487 (-) 681 WP_034326994.1 F0F1 ATP synthase subunit A -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37762.55 Da        Isoelectric Point: 5.5666

>NTDB_id=1115265 BN2458_RS07390 WP_034327000.1 1492025..1493065(-) (recA) [Helicobacter typhlonius strain MIT 97-6810 isolate]
MMIDEKKQKAIELALKQIDKAFGKGALVRLGDKQVEKIDFISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLSLQI
VGECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDTGEQALEILETLTRSGAVDLIVIDSVAALTPKAEIEGDM
GDQHVGLQARLMSHALRKITGVLHKMNATLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRIATLKQNEQQI
GNRTKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGRENAKLLLKEDKALAEE
ITAKIKEQIGAKDEILPLPDEPETNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1115265 BN2458_RS07390 WP_034327000.1 1492025..1493065(-) (recA) [Helicobacter typhlonius strain MIT 97-6810 isolate]
TTGATGATAGATGAGAAAAAGCAGAAAGCCATTGAGTTAGCCTTAAAGCAAATTGATAAAGCATTTGGTAAAGGTGCTTT
GGTGAGGCTTGGGGATAAGCAGGTAGAAAAGATAGATTTTATCTCCACGGGCTCACTCGGGCTTGATATGGCACTTGGCA
TTGGTGGTGTGCCTAAGGGGAGGATTATTGAAATCTATGGTCCAGAATCAAGCGGTAAAACAACACTAAGCCTTCAAATC
GTGGGAGAATGTCAAAGAAATGGCGGAATCTGCGCCTTTATAGACGCTGAACACGCACTTGATGTATATTATGCTAAACG
TTTGGGTGTGGATACAGAGAATCTGCTTGTGTCTCAACCTGATACGGGCGAACAAGCACTTGAGATTTTAGAGACACTCA
CACGCAGTGGTGCAGTGGATTTAATTGTTATAGATTCAGTGGCTGCGCTTACGCCAAAAGCAGAAATTGAGGGCGATATG
GGAGACCAGCACGTAGGGCTTCAAGCGCGGCTTATGAGCCACGCCTTGCGTAAAATTACCGGTGTGCTTCATAAGATGAA
TGCGACTTTGATTTTTATCAACCAAATTCGTATGAAAATTGGCACTATGGGCTATGGTAGCCCAGAGACTACCACCGGCG
GTAATGCGCTTAAGTTTTATGCGAGTGTGCGTATTGATGTGCGCCGCATTGCTACACTCAAGCAAAATGAGCAACAAATT
GGCAATAGAACTAAGGCAAAAGTCGTCAAAAATAAAGTTGCACCACCATTTCGCGAGGCAGAATTTGATATTATGTTTGG
CGAAGGCATTAGTAAAGAGGGTGAGATTATCGATTATGGTATCAAGCTTGATATTATCGATAAAAGTGGTGCGTGGCTTA
GCTATAATGACAAAAAGCTAGGACAGGGGCGCGAGAATGCAAAGCTACTTCTCAAAGAGGATAAGGCTTTGGCAGAAGAA
ATTACTGCAAAGATTAAAGAGCAAATTGGTGCAAAAGATGAGATTCTGCCTCTGCCCGATGAGCCAGAAACTAACGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V6HZX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

89.474

98.844

0.884
  recA Helicobacter pylori strain NCTC11637

89.474

98.844

0.884
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.829

94.798

0.728
  recA Acinetobacter baylyi ADP1

61.561

100

0.616
  recA Neisseria gonorrhoeae MS11

65.231

93.931

0.613
  recA Neisseria gonorrhoeae MS11

65.231

93.931

0.613
  recA Neisseria gonorrhoeae strain FA1090

65.231

93.931

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

65.123

93.642

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

96.821

0.604
  recA Acinetobacter baumannii D1279779

63.914

94.509

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.134

90.462

0.598
  recA Pseudomonas stutzeri DSM 10701

62.691

94.509

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.385

94.509

0.59
  recA Vibrio cholerae strain A1552

62.385

94.509

0.59
  recA Glaesserella parasuis strain SC1401

60.856

94.509

0.575
  recA Lactococcus lactis subsp. cremoris KW2

58.859

96.243

0.566
  recA Streptococcus pneumoniae Rx1

58.434

95.954

0.561
  recA Streptococcus pneumoniae D39

58.434

95.954

0.561
  recA Streptococcus pneumoniae R6

58.434

95.954

0.561
  recA Streptococcus pneumoniae TIGR4

58.434

95.954

0.561
  recA Streptococcus mitis NCTC 12261

58.133

95.954

0.558
  recA Streptococcus mitis SK321

58.133

95.954

0.558
  recA Streptococcus pyogenes NZ131

58.485

95.376

0.558
  recA Streptococcus mutans UA159

58.006

95.665

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

55.362

99.711

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.402

94.798

0.535

Multiple sequence alignment