Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LACPI_RS10620 Genome accession   NZ_LN774769
Coordinates   2187069..2188238 (-) Length   389 a.a.
NCBI ID   WP_047916283.1    Uniprot ID   -
Organism   Lactococcus piscium MKFS47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182069..2193238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS10590 (LACPI_2088) - 2182642..2183232 (-) 591 WP_047916278.1 DUF1349 domain-containing protein -
  LACPI_RS10595 (LACPI_2089) - 2183262..2183900 (-) 639 WP_047916279.1 GNAT family N-acetyltransferase -
  LACPI_RS13135 - 2184164..2184493 (-) 330 WP_419865926.1 hypothetical protein -
  LACPI_RS10605 (LACPI_2091) - 2184919..2185578 (+) 660 WP_047916280.1 cyclic nucleotide-binding domain-containing protein -
  LACPI_RS10610 (LACPI_2092) - 2185748..2186269 (-) 522 WP_047916281.1 HdeD family acid-resistance protein -
  LACPI_RS10615 (LACPI_2093) spx 2186465..2186863 (-) 399 WP_047916282.1 transcriptional regulator Spx -
  LACPI_RS10620 (LACPI_2094) recA 2187069..2188238 (-) 1170 WP_047916283.1 recombinase RecA Machinery gene
  LACPI_RS10625 (LACPI_2095) mutM 2188412..2189245 (-) 834 WP_047916284.1 DNA-formamidopyrimidine glycosylase -
  LACPI_RS10630 (LACPI_2096) - 2189452..2190885 (+) 1434 WP_047916285.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  LACPI_RS10635 (LACPI_2097) hslO 2191099..2191971 (+) 873 WP_047916286.1 Hsp33 family molecular chaperone HslO -
  LACPI_RS10640 (LACPI_2098) dusB 2191961..2192950 (+) 990 WP_047916287.1 tRNA dihydrouridine synthase DusB -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41840.93 Da        Isoelectric Point: 5.5792

>NTDB_id=1114001 LACPI_RS10620 WP_047916283.1 2187069..2188238(-) (recA) [Lactococcus piscium MKFS47]
MAKKVKKNLDDITKKFGDEREKALNDALKIIEKDFGKGALMRLGDKAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GNTQIKGTGEDKDTAMGKETKIKVVKNKVAPPFKVAEVEIMFGEGISQTGELVKIATDLDIIKKSGAWFAYNDEKIGQGS
EKAKLYLKEHPEVFQEIDHKVRKHFGLIDEATAADKSNENPAAKGTKDKAKVSEPELVSLELDTIEIEE

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=1114001 LACPI_RS10620 WP_047916283.1 2187069..2188238(-) (recA) [Lactococcus piscium MKFS47]
TTGGCAAAAAAAGTTAAAAAAAATCTAGATGATATTACTAAAAAATTCGGTGATGAGCGCGAGAAAGCACTCAATGACGC
ACTGAAAATTATTGAAAAAGATTTCGGGAAAGGCGCATTGATGCGTCTTGGTGATAAAGCAGAGCAAAAAGTACAAGTCA
TGAGTTCAGGGTCATTAGCCCTTGATATTGCCTTGGGCGTTGGTGGCTATCCTAAAGGACGGATCATCGAAATTTATGGA
CCTGAATCTTCAGGTAAAACAACTGTTGCGCTTCATGCGGTTGCGCAAGCACAAAAAGAAGGTGGTATTGCAGCATTTAT
CGATGCAGAACATGCACTTGATCCAGCCTACGCAGCAGCACTCGGCGTTAACATAGACGAGTTATTGTTATCACAACCAG
ACTCTGGGGAGCAAGGTCTTGAAATTGCTGGTAAACTGATTGATTCAGGTGCTATTGATTTAGTGGTTATTGACTCAGTA
GCTGCACTTGTACCACGTGCAGAAATTGATGGTGAAATCGGTGATTCTCACGTCGGATTGCAAGCGCGTATGATGTCTCA
AGCCATGCGTAAACTATCATCATCTATTAATAAAACAAAAACAATCGCGATTTTCATCAACCAATTGCGTGAAAAAGTCG
GTGTTATGTTTGGTAGTCCAGAAACAACACCAGGTGGTCGTGCCTTGAAGTTTTATGCCTCAGTTCGTCTAGATGTCCGT
GGTAATACACAGATTAAAGGAACCGGTGAAGATAAAGACACAGCAATGGGTAAAGAAACCAAGATTAAGGTTGTCAAAAA
TAAAGTTGCACCACCATTTAAAGTGGCAGAAGTTGAGATTATGTTCGGTGAGGGGATTTCACAAACAGGAGAACTTGTCA
AAATTGCAACTGACTTAGACATCATCAAAAAATCTGGTGCTTGGTTTGCCTATAATGATGAAAAAATTGGACAAGGGTCA
GAAAAAGCTAAGTTATACTTAAAAGAGCATCCAGAAGTATTCCAGGAGATAGACCATAAAGTTCGGAAACACTTTGGATT
GATTGATGAAGCTACAGCGGCAGATAAATCAAACGAAAATCCTGCAGCAAAAGGGACTAAAGACAAAGCTAAGGTTTCAG
AGCCAGAGCTTGTATCACTAGAGTTAGATACGATAGAGATAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

82.353

100

0.828
  recA Streptococcus pneumoniae R6

82.005

100

0.82
  recA Streptococcus pneumoniae Rx1

82.005

100

0.82
  recA Streptococcus mitis SK321

82.005

100

0.82
  recA Streptococcus pneumoniae D39

82.005

100

0.82
  recA Streptococcus pneumoniae TIGR4

82.005

100

0.82
  recA Streptococcus mutans UA159

79.434

100

0.794
  recA Streptococcus pyogenes NZ131

88.439

88.946

0.787
  recA Lactococcus lactis subsp. cremoris KW2

80.791

91.003

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

69.277

85.347

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

67.477

84.576

0.571
  recA Neisseria gonorrhoeae strain FA1090

60.345

89.46

0.54
  recA Neisseria gonorrhoeae MS11

60.345

89.46

0.54
  recA Neisseria gonorrhoeae MS11

60.345

89.46

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.747

85.347

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

83.033

0.527
  recA Glaesserella parasuis strain SC1401

53.826

97.429

0.524
  recA Acinetobacter baylyi ADP1

58.671

88.946

0.522
  recA Vibrio cholerae strain A1552

58.309

88.175

0.514
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.309

88.175

0.514
  recA Acinetobacter baumannii D1279779

60.366

84.319

0.509
  recA Helicobacter pylori strain NCTC11637

58.788

84.833

0.499
  recA Pseudomonas stutzeri DSM 10701

56.232

88.689

0.499
  recA Helicobacter pylori 26695

58.788

84.833

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.308

85.09

0.496
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.491

0.486

Multiple sequence alignment