Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LMI_RS04895 Genome accession   NZ_LN614830
Coordinates   1085951..1086988 (+) Length   345 a.a.
NCBI ID   WP_045098797.1    Uniprot ID   -
Organism   Legionella micdadei strain ATCC 33218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1080951..1091988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMI_RS04885 (LMI_1056) mutS 1082179..1084707 (-) 2529 WP_045098795.1 DNA mismatch repair protein MutS -
  LMI_RS15305 (LMI_1057) - 1085132..1085296 (+) 165 WP_153280297.1 hypothetical protein -
  LMI_RS04890 (LMI_1058) - 1085374..1085871 (+) 498 WP_045098796.1 CinA family protein -
  LMI_RS04895 (LMI_1059) recA 1085951..1086988 (+) 1038 WP_045098797.1 recombinase RecA Machinery gene
  LMI_RS04900 (LMI_1060) recX 1086981..1087421 (+) 441 WP_045098798.1 recombination regulator RecX -
  LMI_RS04905 (LMI_1061) alaS 1087524..1090115 (+) 2592 WP_045098799.1 alanine--tRNA ligase -
  LMI_RS04910 (LMI_1062) - 1090138..1091430 (+) 1293 WP_045098800.1 aspartate kinase -
  LMI_RS04915 (LMI_1063) mscL 1091470..1091859 (+) 390 WP_045098801.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37386.91 Da        Isoelectric Point: 5.0662

>NTDB_id=1113645 LMI_RS04895 WP_045098797.1 1085951..1086988(+) (recA) [Legionella micdadei strain ATCC 33218]
MEDNKQKALSAALAQIERQFGKGSVMRMGDGNVARDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKKGGTAAFIDAEHALDPGYAAKLGVNVDELLVSQPDTGEQALEITDMLVRSAAVDVIIIDSVAALTPKAEIEGEMG
DAHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGEEILGS
ETRVKVVKNKVAPPFKSTDFDILYNEGISRESEIINLGAQLGLIEKSGAWYSYKQEKIGQGKDNVRMYLKENPQVAQELE
QQIRAELLVKKLPIAEDEMLESVDD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1113645 LMI_RS04895 WP_045098797.1 1085951..1086988(+) (recA) [Legionella micdadei strain ATCC 33218]
ATGGAAGACAATAAACAAAAAGCACTAAGTGCGGCTCTCGCTCAGATTGAACGCCAATTTGGTAAAGGCTCTGTGATGCG
TATGGGAGATGGCAACGTGGCCCGGGATATAGAGGCTATTTCAACGGGTTCATTAGGGCTTGATATTGCTCTAGGCATAG
GAGGGTTACCCAAGGGGCGTATTGTCGAAATTTATGGCCCTGAGTCTTCTGGTAAAACGACATTAACTTTGCAAGTGATT
GCAGAATGCCAAAAAAAAGGGGGTACAGCCGCCTTTATTGATGCAGAGCATGCCCTTGATCCTGGTTACGCGGCAAAACT
CGGTGTTAATGTTGATGAATTGCTCGTTTCGCAGCCTGATACAGGAGAACAAGCATTAGAAATCACTGATATGCTTGTTC
GTTCTGCCGCTGTTGATGTCATTATCATTGACTCTGTTGCTGCATTAACACCTAAAGCGGAAATCGAAGGTGAAATGGGT
GATGCCCATGTAGGCCTGCAAGCAAGATTAATGTCTCAAGCTTTGCGTAAACTGACTGCAAACATCAAGCGTTCTAATAC
ATTGGTTATCTTTATTAACCAAATTCGTATGAAAATTGGGGTGATGTTCGGTAATCCTGAAACGACAACTGGTGGTAACG
CGTTAAAATTTTATGCTTCCGTTCGCCTTGATATACGTCGCACTGGCTCAATCAAAAAAGGTGAAGAGATTTTAGGGAGT
GAAACAAGAGTTAAAGTGGTTAAAAATAAAGTGGCTCCACCTTTCAAAAGCACCGATTTTGATATTCTCTACAACGAAGG
CATTTCTCGGGAGAGCGAAATCATCAATTTAGGAGCCCAGCTAGGACTTATCGAAAAATCGGGAGCCTGGTACTCTTATA
AACAAGAAAAAATTGGTCAGGGCAAAGACAATGTACGGATGTATTTGAAAGAAAATCCGCAAGTCGCTCAGGAGTTAGAG
CAACAGATCCGGGCTGAGTTGTTAGTTAAAAAACTACCAATTGCTGAGGATGAAATGCTTGAGAGCGTGGATGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.485

99.13

0.768
  recA Acinetobacter baylyi ADP1

71.387

100

0.716
  recA Ralstonia pseudosolanacearum GMI1000

70.968

98.841

0.701
  recA Glaesserella parasuis strain SC1401

74.154

94.203

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.171

95.072

0.696
  recA Vibrio cholerae strain A1552

73.171

95.072

0.696
  recA Acinetobacter baumannii D1279779

72.866

95.072

0.693
  recA Neisseria gonorrhoeae MS11

72.308

94.203

0.681
  recA Neisseria gonorrhoeae MS11

72.308

94.203

0.681
  recA Neisseria gonorrhoeae strain FA1090

72.308

94.203

0.681
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.165

96.522

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.939

95.072

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

93.043

0.597
  recA Helicobacter pylori 26695

63.077

94.203

0.594
  recA Helicobacter pylori strain NCTC11637

63.077

94.203

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

58.739

100

0.594
  recA Streptococcus mitis NCTC 12261

59.644

97.681

0.583
  recA Streptococcus pneumoniae Rx1

60.55

94.783

0.574
  recA Streptococcus pneumoniae D39

60.55

94.783

0.574
  recA Streptococcus mitis SK321

60.55

94.783

0.574
  recA Streptococcus pneumoniae R6

60.55

94.783

0.574
  recA Streptococcus pneumoniae TIGR4

60.55

94.783

0.574
  recA Streptococcus mutans UA159

60.061

95.072

0.571
  recA Streptococcus pyogenes NZ131

59.574

95.362

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.692

94.203

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

93.913

0.551

Multiple sequence alignment