Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMCMH_RS08275 Genome accession   NZ_AP038804
Coordinates   1572167..1573186 (-) Length   339 a.a.
NCBI ID   WP_412724474.1    Uniprot ID   -
Organism   Arcobacter sp. 15-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567167..1578186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCMH_RS08255 (ALC152_15890) - 1567303..1568799 (+) 1497 WP_412724466.1 YifB family Mg chelatase-like AAA ATPase -
  ACMCMH_RS08260 (ALC152_15900) fusA 1568864..1570978 (-) 2115 WP_412724468.1 elongation factor G -
  ACMCMH_RS08265 (ALC152_15910) rpsG 1571124..1571591 (-) 468 WP_412724470.1 30S ribosomal protein S7 -
  ACMCMH_RS08270 (ALC152_15920) rpsL 1571608..1571982 (-) 375 WP_412724472.1 30S ribosomal protein S12 -
  ACMCMH_RS08275 (ALC152_15930) recA 1572167..1573186 (-) 1020 WP_412724474.1 recombinase RecA Machinery gene
  ACMCMH_RS08280 (ALC152_15940) argH 1573272..1574648 (-) 1377 WP_412724476.1 argininosuccinate lyase -
  ACMCMH_RS08285 (ALC152_15950) - 1574656..1575453 (-) 798 WP_412724478.1 mechanosensitive ion channel family protein -
  ACMCMH_RS08290 (ALC152_15960) - 1575561..1576541 (-) 981 WP_412724480.1 iron-sulfur cluster assembly scaffold protein -
  ACMCMH_RS08295 (ALC152_15970) - 1576596..1577792 (-) 1197 WP_412724482.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36757.49 Da        Isoelectric Point: 5.5292

>NTDB_id=111267 ACMCMH_RS08275 WP_412724474.1 1572167..1573186(-) (recA) [Arcobacter sp. 15-2]
MNDQQKNALDLAIKQMDKAFGKGTLIRLGDKPVVEMEAISTGSLGLDLALGVGGIPQGRVIEIYGPESSGKTTLTLHAIA
ECQKAGGVCAFIDAEHALDTAYAKNLGVDIDNLLVSQPDYGEQALEILETLVRSGAVDLIVVDSVAALTPKVEIDGDMDD
MQVGVQARLMSKALRKITGIMHKMNTTVVFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIASLKQAEEVIGN
RTKVKVVKNKVAPPFKVVEFDIMFGSGISKMGELIDYGVKMDIIDKAGAWFSYNDSKIGQGKENSKQFLLDNPEIANDIE
QKILLTMGIDTSKKEENKK

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=111267 ACMCMH_RS08275 WP_412724474.1 1572167..1573186(-) (recA) [Arcobacter sp. 15-2]
ATGAATGATCAACAAAAAAACGCTTTAGACCTTGCTATAAAACAAATGGACAAAGCATTTGGTAAAGGTACACTAATAAG
ACTAGGAGATAAACCTGTTGTCGAAATGGAAGCAATTAGTACAGGTTCATTAGGCTTAGATTTAGCACTAGGAGTTGGAG
GGATTCCACAAGGAAGAGTTATAGAAATTTATGGTCCTGAAAGTTCTGGTAAAACAACACTAACACTTCATGCAATTGCA
GAGTGTCAAAAAGCAGGTGGAGTTTGTGCATTTATTGATGCAGAACATGCACTTGATACAGCATACGCAAAAAACCTTGG
TGTTGATATTGATAACTTATTAGTATCACAACCTGATTATGGTGAACAAGCATTAGAGATACTCGAAACTCTTGTAAGAA
GTGGAGCTGTTGATTTAATTGTTGTCGATTCTGTTGCTGCACTTACTCCAAAAGTTGAAATTGATGGAGATATGGATGAT
ATGCAAGTTGGTGTTCAAGCAAGACTTATGTCAAAAGCTTTACGAAAAATAACAGGTATCATGCACAAAATGAATACTAC
CGTAGTTTTTATCAACCAAATTCGTATGAAAATTGGTATGACAGGATATGGTAGTCCAGAAACAACTACAGGTGGAAATG
CCCTTAAGTTTTACTCTTCAGTGAGACTTGATATTAGAAGAATTGCTTCACTAAAACAAGCAGAAGAAGTTATTGGAAAT
AGAACCAAAGTAAAAGTTGTAAAAAATAAAGTAGCACCTCCTTTTAAAGTAGTTGAATTTGATATTATGTTTGGTTCAGG
AATCAGTAAAATGGGTGAACTTATAGATTATGGTGTAAAAATGGATATCATTGATAAAGCTGGTGCTTGGTTTAGTTACA
ACGATTCAAAAATTGGTCAAGGAAAAGAAAACTCAAAACAATTTTTACTTGATAATCCTGAAATAGCAAATGATATAGAA
CAAAAAATATTATTAACAATGGGTATAGATACAAGTAAAAAAGAAGAAAATAAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

74.545

97.345

0.726
  recA Helicobacter pylori strain NCTC11637

73.78

96.755

0.714
  recA Helicobacter pylori 26695

73.78

96.755

0.714
  recA Acinetobacter baylyi ADP1

64.776

98.82

0.64
  recA Acinetobacter baumannii D1279779

63.45

100

0.64
  recA Neisseria gonorrhoeae MS11

65.257

97.64

0.637
  recA Neisseria gonorrhoeae MS11

65.257

97.64

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.257

97.64

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.415

96.755

0.614
  recA Glaesserella parasuis strain SC1401

64

95.87

0.614
  recA Pseudomonas stutzeri DSM 10701

62.848

95.28

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

60.843

97.935

0.596
  recA Ralstonia pseudosolanacearum GMI1000

64.013

92.625

0.593
  recA Vibrio cholerae strain A1552

61.61

95.28

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

95.28

0.587
  recA Streptococcus mutans UA159

56.772

100

0.581
  recA Streptococcus pneumoniae Rx1

56

100

0.578
  recA Streptococcus pneumoniae TIGR4

56

100

0.578
  recA Streptococcus pneumoniae R6

56

100

0.578
  recA Streptococcus pneumoniae D39

56

100

0.578
  recA Streptococcus mitis NCTC 12261

57.185

100

0.575
  recA Streptococcus mitis SK321

56.891

100

0.572
  recA Streptococcus pyogenes NZ131

57.831

97.935

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

56.587

98.525

0.558
  recA Lactococcus lactis subsp. cremoris KW2

56.667

97.345

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.143

94.985

0.543

Multiple sequence alignment