Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KHO07_RS22735 | Genome accession | NZ_HG995459 |
| Coordinates | 4995471..4996529 (-) | Length | 352 a.a. |
| NCBI ID | WP_053159537.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. PP3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4990928..5019908 | 4995471..4996529 | within | 0 |
Gene organization within MGE regions
Location: 4990928..5019908
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHO07_RS22705 | erdR | 4990928..4991578 (-) | 651 | WP_150732121.1 | response regulator transcription factor ErdR | - |
| KHO07_RS22710 | - | 4991798..4992541 (-) | 744 | WP_150732120.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| KHO07_RS22715 | - | 4992731..4993153 (+) | 423 | WP_212625602.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| KHO07_RS22720 | - | 4993154..4993348 (-) | 195 | WP_075946787.1 | hypothetical protein | - |
| KHO07_RS22725 | - | 4993833..4994951 (+) | 1119 | WP_150732119.1 | TIGR00730 family Rossman fold protein | - |
| KHO07_RS22730 | recX | 4994995..4995462 (-) | 468 | WP_130906364.1 | recombination regulator RecX | - |
| KHO07_RS22735 | recA | 4995471..4996529 (-) | 1059 | WP_053159537.1 | recombinase RecA | Machinery gene |
| KHO07_RS22740 | - | 4996613..4997113 (-) | 501 | WP_075946857.1 | CinA family protein | - |
| KHO07_RS22745 | - | 4997194..4997730 (-) | 537 | WP_212625603.1 | lysis system i-spanin subunit Rz | - |
| KHO07_RS22750 | - | 4997712..4998275 (-) | 564 | WP_075946782.1 | glycoside hydrolase family 19 protein | - |
| KHO07_RS22755 | - | 4998329..4999345 (-) | 1017 | WP_212625604.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| KHO07_RS22760 | - | 4999355..4999567 (-) | 213 | WP_075946780.1 | tail protein X | - |
| KHO07_RS22765 | - | 4999560..4999943 (-) | 384 | WP_212625605.1 | phage tail protein | - |
| KHO07_RS22770 | - | 4999943..5001589 (-) | 1647 | WP_212625606.1 | glycine zipper domain-containing protein | - |
| KHO07_RS22775 | - | 5001718..5002299 (-) | 582 | WP_212625607.1 | phage tail assembly protein | - |
| KHO07_RS22780 | - | 5002465..5002971 (-) | 507 | WP_212625608.1 | phage major tail tube protein | - |
| KHO07_RS22785 | - | 5002971..5004137 (-) | 1167 | WP_075946775.1 | phage tail protein | - |
| KHO07_RS22790 | - | 5004140..5004349 (-) | 210 | WP_075946774.1 | hypothetical protein | - |
| KHO07_RS22795 | - | 5004449..5004871 (-) | 423 | WP_212625609.1 | phage tail assembly chaperone | - |
| KHO07_RS22800 | - | 5004874..5006760 (-) | 1887 | WP_212625610.1 | phage tail protein | - |
| KHO07_RS22805 | - | 5006761..5007396 (-) | 636 | WP_075946771.1 | phage tail protein I | - |
| KHO07_RS22810 | - | 5007393..5008388 (-) | 996 | WP_212625611.1 | baseplate J/gp47 family protein | - |
| KHO07_RS22815 | - | 5008385..5008717 (-) | 333 | WP_212625612.1 | phage baseplate protein | - |
| KHO07_RS22820 | - | 5008729..5009340 (-) | 612 | WP_212625613.1 | phage baseplate assembly protein V | - |
| KHO07_RS22825 | - | 5009344..5009868 (-) | 525 | WP_212625614.1 | hypothetical protein | - |
| KHO07_RS22830 | - | 5009900..5010247 (-) | 348 | WP_150704261.1 | phage holin family protein | - |
| KHO07_RS22835 | - | 5010780..5011514 (-) | 735 | WP_150732457.1 | XRE family transcriptional regulator | - |
| KHO07_RS22840 | mutS | 5011725..5014304 (+) | 2580 | WP_212625615.1 | DNA mismatch repair protein MutS | - |
| KHO07_RS22845 | fdxA | 5014447..5014770 (+) | 324 | WP_150732116.1 | ferredoxin FdxA | - |
| KHO07_RS22850 | rpoS | 5015255..5016262 (-) | 1008 | WP_056856224.1 | RNA polymerase sigma factor RpoS | - |
| KHO07_RS22855 | - | 5016367..5017224 (-) | 858 | WP_150732456.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| KHO07_RS22860 | - | 5017436..5018071 (-) | 636 | WP_177336601.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| KHO07_RS22865 | surE | 5018113..5018862 (-) | 750 | WP_150732115.1 | 5'/3'-nucleotidase SurE | - |
| KHO07_RS22870 | truD | 5018850..5019908 (-) | 1059 | WP_212625616.1 | tRNA pseudouridine(13) synthase TruD | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37395.81 Da Isoelectric Point: 5.2957
>NTDB_id=1112619 KHO07_RS22735 WP_053159537.1 4995471..4996529(-) (recA) [Pseudomonas sp. PP3]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKYLADNPDIAATLEK
QLRDKLLSPSSVADAKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKYLADNPDIAATLEK
QLRDKLLSPSSVADAKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=1112619 KHO07_RS22735 WP_053159537.1 4995471..4996529(-) (recA) [Pseudomonas sp. PP3]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGGCTGGACATCGCTCTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTGACCTTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACTTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCGTCGGTTCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTCGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAAGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTCGGCGTTCTGCATGGTTTCGTCGAGAAGTCCGGTGCATGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCTGCCAAGTACCTGGCGGATAACCCGGACATCGCCGCAACGCTCGAGAAG
CAACTGCGCGACAAGCTGCTGTCTCCTTCGTCGGTAGCAGATGCCAAAGCTTCTGCCGTCAAAGAGACTGAAGACGACCT
GGCTGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGGCTGGACATCGCTCTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTGACCTTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACTTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCGTCGGTTCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTCGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAAGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTCGGCGTTCTGCATGGTTTCGTCGAGAAGTCCGGTGCATGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCTGCCAAGTACCTGGCGGATAACCCGGACATCGCCGCAACGCTCGAGAAG
CAACTGCGCGACAAGCTGCTGTCTCCTTCGTCGGTAGCAGATGCCAAAGCTTCTGCCGTCAAAGAGACTGAAGACGACCT
GGCTGACGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.