Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KHN79_RS11255 Genome accession   NZ_HG992749
Coordinates   2487479..2488525 (-) Length   348 a.a.
NCBI ID   WP_182011755.1    Uniprot ID   A0A6V7HL72
Organism   Vibrio sp. B1FLJ16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482479..2493525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS11240 (ACOMICROBIO_LOCUS1647) - 2482739..2483926 (-) 1188 WP_182011754.1 aspartate kinase -
  KHN79_RS11245 (ACOMICROBIO_LOCUS1648) alaS 2484118..2486700 (-) 2583 WP_182011753.1 alanine--tRNA ligase -
  KHN79_RS11250 (ACOMICROBIO_FLGHMIGD_02278) recX 2486864..2487331 (-) 468 WP_182011752.1 recombination regulator RecX -
  KHN79_RS11255 (ACOMICROBIO_LOCUS1649) recA 2487479..2488525 (-) 1047 WP_182011755.1 recombinase RecA Machinery gene
  KHN79_RS11260 (ACOMICROBIO_FLGHMIGD_02280) pncC 2488717..2489208 (-) 492 WP_182011751.1 nicotinamide-nucleotide amidase -
  KHN79_RS11265 - 2489443..2489772 (-) 330 WP_182011750.1 hypothetical protein -
  KHN79_RS11270 (ACOMICROBIO_FLGHMIGD_02281) - 2489860..2490147 (-) 288 WP_182011749.1 hypothetical protein -
  KHN79_RS11275 (ACOMICROBIO_LOCUS1650) - 2490168..2491091 (-) 924 WP_182011748.1 OmpA family protein -
  KHN79_RS21615 (ACOMICROBIO_LOCUS1651) - 2491107..2491298 (-) 192 WP_244812563.1 hypothetical protein -
  KHN79_RS11280 (ACOMICROBIO_LOCUS1652) - 2491291..2491965 (-) 675 WP_244812565.1 motility-associated protein -
  KHN79_RS11285 (ACOMICROBIO_LOCUS1653) - 2491976..2492662 (-) 687 WP_182011746.1 sigma-70 family RNA polymerase sigma factor -
  KHN79_RS11290 (ACOMICROBIO_FLGHMIGD_02286) - 2492671..2493111 (-) 441 WP_182011745.1 flagellar basal body-associated FliL family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37507.00 Da        Isoelectric Point: 4.8894

>NTDB_id=1112441 KHN79_RS11255 WP_182011755.1 2487479..2488525(-) (recA) [Vibrio sp. B1FLJ16]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKNKLVEKAGAWYSYNGDKIGQGKANACNYLRENPEVAKTIDT
KLREMLLSPALAEAPEAGEMPEQKEEEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1112441 KHN79_RS11255 WP_182011755.1 2487479..2488525(-) (recA) [Vibrio sp. B1FLJ16]
ATGGACGAGAACAAACAAAAGGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAACAATTCGGTAAAGGCTCAATCATGCG
CCTTGGCGATAACCGCGCAATGGACGTAGAAACCATTTCAACGGGTTCTCTTTCTCTTGATATTGCTTTGGGTGCTGGTG
GTTTACCAATGGGTCGTATCGTAGAAATCTACGGTCCGGAATCTTCAGGTAAAACAACGCTAACTCTGGAACTAATTGCT
GCAGCACAGCGCGAAGGTAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTGGATCCTGTCTACGCTAAGAAGCTTGG
CGTTGATATCGATGCGCTATTGGTTTCTCAGCCAGATACTGGTGAACAAGCGCTAGAAATCTGTGACGCGTTAGCACGTT
CAGGTGCTATCGATGTTATGGTTGTCGACTCGGTTGCGGCTCTGACACCAAAAGCAGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTGCAAGCACGTATGCTTTCTCAGGCAATGCGTAAGCTAACAGGTAACCTGAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACCACTGGTGGTAACGCAC
TTAAGTTCTACGCATCGGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTAGTCGGTAACGAA
ACTCGCATTAAAGTTGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAGATCATGTACGGCCAGGGCTT
TAACCGTGAAGGCGAACTTGTTGACTTAGGTGTGAAGAACAAGCTAGTTGAAAAAGCCGGTGCTTGGTACAGCTACAATG
GTGACAAGATCGGTCAGGGTAAAGCAAACGCTTGTAACTACCTGCGTGAAAACCCAGAAGTGGCGAAGACTATCGACACG
AAACTTCGCGAAATGTTGCTATCTCCAGCTTTAGCAGAAGCGCCAGAAGCGGGTGAAATGCCAGAGCAAAAAGAAGAAGA
GTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7HL72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.085

100

0.914
  recA Vibrio cholerae strain A1552

90.085

100

0.914
  recA Acinetobacter baylyi ADP1

71.884

99.138

0.713
  recA Acinetobacter baumannii D1279779

75

94.253

0.707
  recA Pseudomonas stutzeri DSM 10701

74.924

93.966

0.704
  recA Glaesserella parasuis strain SC1401

68.103

100

0.681
  recA Neisseria gonorrhoeae MS11

65.903

100

0.661
  recA Neisseria gonorrhoeae MS11

65.903

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

65.903

100

0.661
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.368

0.638
  recA Helicobacter pylori strain NCTC11637

59.026

100

0.592
  recA Helicobacter pylori 26695

58.739

100

0.589
  recA Streptococcus mutans UA159

58.739

100

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.667

0.58
  recA Streptococcus pneumoniae R6

62.229

92.816

0.578
  recA Streptococcus pneumoniae Rx1

62.229

92.816

0.578
  recA Streptococcus pneumoniae D39

62.229

92.816

0.578
  recA Streptococcus pneumoniae TIGR4

62.229

92.816

0.578
  recA Streptococcus mitis SK321

62.229

92.816

0.578
  recA Streptococcus mitis NCTC 12261

61.92

92.816

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

57.803

99.425

0.575
  recA Streptococcus pyogenes NZ131

61.231

93.391

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

92.241

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.115

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.681

92.816

0.563

Multiple sequence alignment