Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KJB05_RS03270 Genome accession   NZ_HG992742
Coordinates   685759..686811 (+) Length   350 a.a.
NCBI ID   WP_208445009.1    Uniprot ID   A0A812FEU5
Organism   Vibrio sp. B1ASS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680759..691811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS03250 (ACOMICROBIO_LOCUS429) - 681156..682367 (+) 1212 WP_208445006.1 AAA family ATPase -
  KJB05_RS03255 (ACOMICROBIO_LOCUS430) - 682384..684024 (+) 1641 WP_208445007.1 type I restriction-modification system subunit M -
  KJB05_RS28505 - 684102..684299 (-) 198 Protein_571 integrase -
  KJB05_RS03260 (ACOMICROBIO_NCLOACGD_00663) pncC 684696..685178 (+) 483 WP_208445008.1 nicotinamide-nucleotide amidase -
  KJB05_RS03265 (ACOMICROBIO_LOCUS431) recA 685358..685570 (+) 213 Protein_573 recombinase RecA -
  KJB05_RS03270 (ACOMICROBIO_LOCUS432) recA 685759..686811 (+) 1053 WP_208445009.1 recombinase RecA Machinery gene
  KJB05_RS03275 (ACOMICROBIO_NCLOACGD_00666) - 686893..689088 (+) 2196 WP_244142920.1 hypothetical protein -
  KJB05_RS03280 (ACOMICROBIO_LOCUS433) - 689085..691334 (+) 2250 WP_208445010.1 hypothetical protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37766.16 Da        Isoelectric Point: 5.0616

>NTDB_id=1112385 KJB05_RS03270 WP_208445009.1 685759..686811(+) (recA) [Vibrio sp. B1ASS3]
MSVDENKQKALAAALGQIEKQFGKGSIMRLGENRTMDVETISTGSLSLDIALGAGGLPMGRITEVYGPESSGKTTLTLEL
IAAAQRQGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTGEQALEIVDALARSGAVDVLVVDSVAALTPKAEIEGEM
GDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENPEVAKTI
DTKLRELLLTPAKPEDVSVDENDVAEDDAF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1112385 KJB05_RS03270 WP_208445009.1 685759..686811(+) (recA) [Vibrio sp. B1ASS3]
ATGTCTGTAGACGAAAATAAGCAAAAAGCGCTTGCAGCCGCGCTAGGTCAAATTGAAAAGCAGTTTGGTAAAGGCTCAAT
CATGAGGTTGGGCGAAAACCGCACAATGGACGTTGAAACTATCTCAACAGGTTCGCTTTCACTGGATATTGCGTTGGGTG
CAGGTGGTCTACCTATGGGCAGGATAACCGAGGTATATGGCCCAGAATCGAGCGGAAAAACAACGCTAACCCTTGAGCTT
ATTGCTGCCGCACAACGTCAAGGTAAGACATGTGCATTCATTGATGCGGAGCACGCATTAGACCCTATCTATGCGAGAAA
GCTCGGTGTAGATATTGACAATCTACTTGTATCACAACCCGATACTGGCGAGCAAGCACTAGAAATTGTTGATGCATTAG
CTCGCTCAGGTGCAGTAGATGTGCTTGTAGTCGACTCGGTAGCAGCACTGACTCCTAAGGCTGAAATTGAAGGTGAGATG
GGTGATAGCCACATGGGTCTGCAAGCACGTATGCTGAGTCAGGCTATGCGCAAGATTACTGGTAACCTAAAGCAGTCTAA
CTGTATGTGTATCTTCATCAACCAAATCCGAATGAAGATAGGGGTCATGTTTGGCAACCCAGAAACAACAACTGGCGGTA
ACGCACTTAAATTCTACGCATCGGTTCGTCTTGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGACGAAGTAGTTGGT
AACGAAACTCGCATCAAAGTCGTTAAGAACAAAATTGCTGCACCATTTAAAGAAGCTAATACTCAAATCATGTATGGCCA
AGGTTTTAACCGCGAAGGCGAACTGGTTGATTTGGGTGTGAAGCACAAGCTAGTTGAAAAAGCGGGTGCTTGGTACAGCT
ACAATGGTGACAAGATTGGCCAAGGTAAAGCGAATGCTTGTAAGTACCTGCGCGAAAACCCAGAAGTGGCAAAGACCATC
GATACTAAACTTCGCGAGCTACTCTTGACTCCTGCTAAGCCTGAAGATGTTAGTGTTGATGAAAACGATGTTGCAGAGGA
CGATGCGTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FEU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.306

98.857

0.883
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.306

98.857

0.883
  recA Pseudomonas stutzeri DSM 10701

72.334

99.143

0.717
  recA Acinetobacter baylyi ADP1

71.884

98.571

0.709
  recA Acinetobacter baumannii D1279779

72.434

97.429

0.706
  recA Glaesserella parasuis strain SC1401

67.622

99.714

0.674
  recA Ralstonia pseudosolanacearum GMI1000

70.159

90

0.631
  recA Neisseria gonorrhoeae MS11

66.871

93.143

0.623
  recA Neisseria gonorrhoeae MS11

66.871

93.143

0.623
  recA Neisseria gonorrhoeae strain FA1090

66.871

93.143

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

91.714

0.577
  recA Helicobacter pylori strain NCTC11637

61.468

93.429

0.574
  recA Streptococcus mitis SK321

62.229

92.286

0.574
  recA Streptococcus pneumoniae TIGR4

62.229

92.286

0.574
  recA Streptococcus pneumoniae R6

62.229

92.286

0.574
  recA Streptococcus pneumoniae D39

62.229

92.286

0.574
  recA Streptococcus pneumoniae Rx1

62.229

92.286

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

59.821

96

0.574
  recA Streptococcus mitis NCTC 12261

61.92

92.286

0.571
  recA Helicobacter pylori 26695

61.162

93.429

0.571
  recA Streptococcus mutans UA159

61.231

92.857

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.382

91.143

0.569
  recA Streptococcus pyogenes NZ131

60.923

92.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.83

90.571

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.559

95.143

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.286

0.549

Multiple sequence alignment