Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMCNJ_RS03035 Genome accession   NZ_AP038788
Coordinates   651992..653050 (+) Length   352 a.a.
NCBI ID   WP_226692009.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1656     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 646992..658050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNJ_RS03010 (THUN1656_05620) - 647417..648247 (-) 831 WP_226692013.1 virulence factor BrkB family protein -
  ACMCNJ_RS03015 (THUN1656_05630) - 648244..648717 (-) 474 WP_226692012.1 YchJ family protein -
  ACMCNJ_RS03020 (THUN1656_05640) - 648710..649378 (-) 669 WP_226692937.1 MOSC domain-containing protein -
  ACMCNJ_RS03025 (THUN1656_05650) - 649499..650998 (+) 1500 WP_226692011.1 helicase HerA-like C-terminal domain-containing protein -
  ACMCNJ_RS03030 (THUN1656_05660) udp 651044..651802 (+) 759 WP_226692010.1 uridine phosphorylase -
  ACMCNJ_RS03035 (THUN1656_05670) recA 651992..653050 (+) 1059 WP_226692009.1 recombinase RecA Machinery gene
  ACMCNJ_RS03040 (THUN1656_05680) recX 653188..653649 (+) 462 WP_226692008.1 recombination regulator RecX -
  ACMCNJ_RS03045 (THUN1656_05690) crcB 653651..654034 (-) 384 WP_226692007.1 fluoride efflux transporter CrcB -
  ACMCNJ_RS03050 (THUN1656_05700) - 654034..654852 (-) 819 WP_226692006.1 Cof-type HAD-IIB family hydrolase -
  ACMCNJ_RS03055 (THUN1656_05710) tuf 654992..656176 (-) 1185 WP_226692005.1 elongation factor Tu -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37697.21 Da        Isoelectric Point: 4.9680

>NTDB_id=111201 ACMCNJ_RS03035 WP_226692009.1 651992..653050(+) (recA) [Rodentibacter sp. THUN1656]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSIGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEIIG
NETKVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVDKSGAWYAYNGEKIGQGKANAMKWLHENPEKAGEL
ESKLRAELVANPEQSLMADIEQAEQDSSEELE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=111201 ACMCNJ_RS03035 WP_226692009.1 651992..653050(+) (recA) [Rodentibacter sp. THUN1656]
ATGGCAACTCAAGAAGAAAAACAAAAAGCACTTGCTGCGGCATTAGGGCAAATTGAAAAACAATTCGGTAAAGGCTCGAT
CATGAAATTGGGGGACACCAAAACACTTGATGTTGAATCAATCTCAACAGGATCAATCGGTTTGGATGTTGCATTAGGTA
TCGGCGGTTTACCAATGGGGCGTATCGTTGAGATTTTTGGACCGGAGTCTTCCGGTAAAACCACACTAACCCTCTCCGTT
ATCGCTCAAGCACAAAAAGCAGGCAAAACCTGTGCCTTTATTGATGCCGAGCACGCTCTTGATCCTATTTATGCGGCGAA
ACTTGGGGTTGATGTAAAGGAATTGCTGGTTTCTCAGCCGGACAATGGTGAACAGGCGCTTGAAATCTGTGATGCTCTTG
TTCGCTCCGGTGCGGTTGATGTAGTTATTGTGGACTCTGTCGCCGCACTTACACCAAAAGCGGAAATTGAAGGAGATATG
GGAGATTCCCATATGGGTTTACAAGCCCGCTTAATGTCTCAAGCGTTACGTAAATTAACCGGTCAAATTAAAAATGCTAA
CTGTTTGGTTATCTTTATCAACCAAATCCGTATGAAAATCGGGGTAATGTTCGGTAATCCTGAAACAACGACCGGCGGTA
ATGCGCTTAAATTCTACTCTTCCGTTCGCTTAGACATTCGTCGCACCGGCTCTGTAAAAGATGGTGATGAAATTATCGGT
AATGAAACAAAAGTAAAAGTAGTAAAAAACAAACTTGCCGCGCCATTCCGCCAAGTAGACTTCCAAATTCTTTATGGGGA
AGGAATTTCAAAAGCCGGTGAATTGATTGAACTCGGTGTAAAACATAAACTCGTCGATAAATCAGGTGCTTGGTATGCCT
ATAATGGTGAGAAAATTGGTCAAGGTAAAGCCAATGCAATGAAATGGCTACACGAAAATCCGGAAAAAGCGGGAGAGCTA
GAATCTAAACTCCGCGCCGAATTAGTTGCGAACCCTGAACAATCACTTATGGCGGATATTGAACAAGCCGAACAGGATTC
TTCAGAAGAATTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.921

100

0.761
  recA Vibrio cholerae strain A1552

75.802

97.443

0.739
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.802

97.443

0.739
  recA Pseudomonas stutzeri DSM 10701

76.923

92.33

0.71
  recA Acinetobacter baylyi ADP1

69.364

98.295

0.682
  recA Neisseria gonorrhoeae MS11

73.684

91.761

0.676
  recA Neisseria gonorrhoeae MS11

73.684

91.761

0.676
  recA Neisseria gonorrhoeae strain FA1090

73.684

91.761

0.676
  recA Acinetobacter baumannii D1279779

71.385

92.33

0.659
  recA Ralstonia pseudosolanacearum GMI1000

73.016

89.489

0.653
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.284

95.17

0.602
  recA Helicobacter pylori 26695

61.765

96.591

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.615

90.057

0.591
  recA Helicobacter pylori strain NCTC11637

61.176

96.591

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

90.909

0.58
  recA Streptococcus mutans UA159

57.386

100

0.574
  recA Streptococcus pneumoniae Rx1

58.092

98.295

0.571
  recA Streptococcus pneumoniae R6

58.092

98.295

0.571
  recA Streptococcus pneumoniae TIGR4

58.092

98.295

0.571
  recA Streptococcus pneumoniae D39

58.092

98.295

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

92.898

0.565
  recA Streptococcus mitis NCTC 12261

59.633

92.898

0.554
  recA Streptococcus mitis SK321

59.633

92.898

0.554
  recA Streptococcus pyogenes NZ131

58.537

93.182

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

91.761

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.538

92.33

0.531

Multiple sequence alignment