Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJA_RS02460 Genome accession   NZ_HG322949
Coordinates   594872..595975 (+) Length   367 a.a.
NCBI ID   WP_038488413.1    Uniprot ID   W0UZX1
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589872..600975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS02440 (GJA_507) - 590080..592125 (-) 2046 WP_038488401.1 sodium:solute symporter family protein -
  GJA_RS02445 (GJA_508) - 592122..592406 (-) 285 WP_038488404.1 DUF4212 domain-containing protein -
  GJA_RS02450 (GJA_509) - 592390..593934 (-) 1545 WP_038488407.1 sensor histidine kinase N-terminal domain-containing protein -
  GJA_RS02455 (GJA_510) - 593931..594638 (-) 708 WP_038488410.1 response regulator transcription factor -
  GJA_RS02460 (GJA_511) recA 594872..595975 (+) 1104 WP_038488413.1 recombinase RecA Machinery gene
  GJA_RS02465 (GJA_512) recX 596131..596586 (+) 456 WP_038488416.1 recombination regulator RecX -
  GJA_RS02470 (GJA_513) - 596697..598235 (+) 1539 WP_038488420.1 methyltransferase regulatory domain-containing protein -
  GJA_RS02475 (GJA_514) - 598580..599140 (+) 561 WP_038488423.1 DUF2889 domain-containing protein -
  GJA_RS02480 (GJA_515) sucC 599219..600388 (+) 1170 WP_038488426.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39030.68 Da        Isoelectric Point: 6.3101

>NTDB_id=1111894 GJA_RS02460 WP_038488413.1 594872..595975(+) (recA) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDSSAPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAADKADKADKADKAEAAAKLKAVE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1111894 GJA_RS02460 WP_038488413.1 594872..595975(+) (recA) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGGACGACAAAAAAGCGGTAGTACCCGCATCTGAAAAGGCCAAGGCGCTTGCCGCCGCACTGGCGCAAATCGAGAAGCA
GTTCGGCAAAGGTTCGGTCATGCGGATGGATTCCAGCGCGCCGATCGAAGAAGTGCAAGTCGTATCGACCGGTTCGCTCG
GCCTGGATATCGCGCTGGGCGTCGGCGGCTTGCCGCGCGGCCGCGTGGTGGAAATCTACGGCCCTGAATCGTCGGGCAAG
ACCACGCTGACGCTGCAAACCATCGCCGAAATGCAAAAGCTGGGCGGCACCTGCGCCTTTATCGATGCCGAGCACGCGCT
CGATGTCGGCTATGCCCAAAAACTGGGCGTCAACCTGCATGAATTGCTGATCTCGCAGCCGGACACCGGCGAACAGGCAC
TGGAAATCTGCGATGCGCTGGTCCGTTCGGGCAGCGTCGACCTGGTCGTCATCGACTCGGTGGCGGCCTTGACGCCACGC
GCCGAGATCGAAGGCGACATGGGCGATTCGCTGCCAGGCTTGCAAGCCCGTTTGATGTCGCAAGCATTGCGCAAGCTGAC
CGGCTCGATCAACCGCACCAATACGCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCC
CGGAAACCACTACCGGCGGCAATGCCTTGAAATTCTACGCTTCCGTGCGCCTGGATATCCGCCGCACCGGCTCGATCAAA
TCGGGCGATGAAGTGATCGGTAATGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCATTCAAGGAAGCGCA
TTTCGATATCCTGTACGGCGCAGGCACCTCGCGCGAAGGCGAAATCCTCGACCTGGGTTCGGACGCGAAAATCGTCGAAA
AATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGATAACGCCCGCGCCTTCCTGCAAGAGCGT
CCGGCGCTGGCGCGCGAAATTGAAAACAAGGTGCGTGCTTCGCTGGGCGTGCGCGAACTGCCGCCGCTGGCTGCCGACAA
GGCGGATAAAGCGGACAAGGCCGACAAGGCGGAGGCCGCCGCCAAACTGAAAGCGGTGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0UZX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.553

0.768
  recA Neisseria gonorrhoeae MS11

72.866

89.373

0.651
  recA Neisseria gonorrhoeae MS11

72.866

89.373

0.651
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.373

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.118

92.643

0.64
  recA Vibrio cholerae strain A1552

69.118

92.643

0.64
  recA Pseudomonas stutzeri DSM 10701

68.915

92.916

0.64
  recA Glaesserella parasuis strain SC1401

66.667

95.64

0.638
  recA Acinetobacter baylyi ADP1

70.588

88.011

0.621
  recA Acinetobacter baumannii D1279779

70.279

88.011

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.366

90.736

0.602
  recA Streptococcus pneumoniae TIGR4

59.887

96.458

0.578
  recA Streptococcus pneumoniae R6

59.887

96.458

0.578
  recA Streptococcus pneumoniae D39

59.887

96.458

0.578
  recA Streptococcus pneumoniae Rx1

59.887

96.458

0.578
  recA Helicobacter pylori 26695

63.473

91.008

0.578
  recA Helicobacter pylori strain NCTC11637

63.174

91.008

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Streptococcus mitis NCTC 12261

60.172

95.095

0.572
  recA Streptococcus mitis SK321

59.885

95.095

0.569
  recA Streptococcus mutans UA159

62.651

90.463

0.567
  recA Streptococcus pyogenes NZ131

63.222

89.646

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.828

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.918

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.691

89.101

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.631

90.191

0.556

Multiple sequence alignment