Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMCNE_RS05515 Genome accession   NZ_AP038758
Coordinates   1221546..1222589 (-) Length   347 a.a.
NCBI ID   WP_412733235.1    Uniprot ID   -
Organism   Minisyncoccus archaeophilus strain PMX.108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1216546..1227589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNE_RS05485 (MNSC_10750) - 1216884..1218206 (-) 1323 WP_412732393.1 phosphomannomutase/phosphoglucomutase -
  ACMCNE_RS05490 (MNSC_10760) - 1218208..1219131 (-) 924 WP_412732394.1 LamG domain-containing protein -
  ACMCNE_RS05495 (MNSC_10770) - 1219186..1220106 (-) 921 WP_412732395.1 LamG domain-containing protein -
  ACMCNE_RS05500 (MNSC_10780) - 1220303..1220794 (+) 492 WP_412732396.1 30S ribosomal protein S6 -
  ACMCNE_RS05505 (MNSC_10790) - 1220822..1221298 (+) 477 WP_412732397.1 single-stranded DNA-binding protein -
  ACMCNE_RS05510 (MNSC_10800) rpsR 1221319..1221516 (+) 198 WP_412732398.1 30S ribosomal protein S18 -
  ACMCNE_RS05515 (MNSC_10810) recA 1221546..1222589 (-) 1044 WP_412733235.1 recombinase RecA Machinery gene
  ACMCNE_RS05520 (MNSC_10820) - 1222736..1225021 (-) 2286 WP_412732399.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37667.32 Da        Isoelectric Point: 5.0158

>NTDB_id=111071 ACMCNE_RS05515 WP_412733235.1 1221546..1222589(-) (recA) [Minisyncoccus archaeophilus strain PMX.108]
MEKEKINLEEAISEIREKFGDGAIMKLKDAQKVNVDVVPTGSLSLDIALGVMGIPRGRIIEIYGGESSGKTTITLSVIAE
AQKKGGVTAFIDAEHALDPDYARRIGVNVDDLLISQPDSAEQGLQIVESLVRSGEVDVIVVDSVAALVPKAEVAGEMGEM
QIGLQARLMSQALRKLSSIVAKTKTIVIFINQTRMKVGILFGNPETTPGGLALKFYSSVRLELRRIAQVKQGENIIGSRV
RVKVVKNKVAAPFKTSEFDIYYNEGISKESELINLAIKEGIVKKSGAFISYGDMKLGQGMEKSKEFLKTDQAVFNEIREK
ILKKIESEGSVSIGSSGEESDDEESTE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=111071 ACMCNE_RS05515 WP_412733235.1 1221546..1222589(-) (recA) [Minisyncoccus archaeophilus strain PMX.108]
ATGGAGAAGGAGAAGATAAACTTGGAAGAAGCGATTTCTGAAATTAGAGAGAAGTTTGGCGATGGAGCGATAATGAAATT
GAAGGATGCTCAGAAGGTGAATGTGGACGTGGTACCTACAGGGTCACTTTCATTAGATATTGCTTTAGGAGTAATGGGAA
TTCCAAGAGGAAGAATAATTGAAATATATGGAGGTGAGAGTTCGGGAAAAACTACTATAACTTTGAGTGTTATTGCGGAG
GCACAGAAGAAGGGTGGTGTAACTGCGTTTATTGATGCAGAGCATGCTTTGGATCCAGATTATGCAAGGAGGATAGGGGT
TAATGTAGACGATTTATTGATTTCTCAGCCTGACTCTGCTGAGCAAGGATTGCAGATTGTTGAGAGCTTGGTGAGGTCTG
GCGAGGTAGATGTAATAGTAGTTGATTCAGTGGCTGCATTAGTACCTAAGGCTGAGGTAGCTGGAGAGATGGGGGAAATG
CAGATTGGATTGCAGGCTAGGTTAATGTCTCAGGCTTTAAGAAAATTATCTAGTATTGTAGCCAAGACTAAGACAATAGT
GATTTTCATTAATCAGACAAGGATGAAGGTGGGGATACTTTTTGGCAATCCAGAAACAACTCCCGGAGGACTAGCTCTGA
AGTTCTACAGTTCAGTTAGATTAGAATTAAGGAGGATTGCTCAGGTTAAGCAAGGAGAGAATATTATTGGATCAAGAGTA
AGGGTTAAAGTAGTGAAGAACAAAGTAGCTGCACCATTCAAGACGTCTGAATTTGATATATATTATAATGAGGGAATATC
TAAGGAGTCGGAGTTGATTAATTTGGCTATAAAGGAAGGTATAGTCAAGAAGTCGGGAGCATTTATCTCATATGGAGATA
TGAAGTTAGGTCAAGGTATGGAGAAGTCAAAGGAGTTCTTAAAAACTGATCAAGCTGTTTTTAATGAAATAAGGGAAAAG
ATATTGAAGAAAATTGAGTCTGAGGGCTCTGTATCAATTGGTTCTTCGGGGGAAGAGAGCGATGACGAAGAGTCGACTGA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.558

99.135

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

60.436

92.507

0.559
  recA Glaesserella parasuis strain SC1401

55.78

99.712

0.556
  recA Streptococcus mutans UA159

54.416

100

0.55
  recA Streptococcus pyogenes NZ131

55.102

98.847

0.545
  recA Acinetobacter baylyi ADP1

54.971

98.559

0.542
  recA Neisseria gonorrhoeae MS11

56.119

96.542

0.542
  recA Neisseria gonorrhoeae strain FA1090

56.119

96.542

0.542
  recA Neisseria gonorrhoeae MS11

56.119

96.542

0.542
  recA Helicobacter pylori 26695

59.119

91.643

0.542
  recA Helicobacter pylori strain NCTC11637

59.119

91.643

0.542
  recA Ralstonia pseudosolanacearum GMI1000

57.187

94.236

0.539
  recA Streptococcus pneumoniae TIGR4

56.707

94.524

0.536
  recA Streptococcus pneumoniae Rx1

56.707

94.524

0.536
  recA Streptococcus pneumoniae R6

56.707

94.524

0.536
  recA Streptococcus pneumoniae D39

56.707

94.524

0.536
  recA Streptococcus mitis SK321

57.099

93.372

0.533
  recA Lactococcus lactis subsp. cremoris KW2

58.176

91.643

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.632

92.507

0.533
  recA Latilactobacillus sakei subsp. sakei 23K

58.599

90.49

0.53
  recA Streptococcus mitis NCTC 12261

56.79

93.372

0.53
  recA Pseudomonas stutzeri DSM 10701

56.481

93.372

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.491

96.254

0.524
  recA Acinetobacter baumannii D1279779

55.728

93.084

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

54.688

92.219

0.504
  recA Vibrio cholerae strain A1552

54.688

92.219

0.504

Multiple sequence alignment