Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACOBWA_RS12270 Genome accession   NZ_CP184640
Coordinates   2642374..2643426 (+) Length   350 a.a.
NCBI ID   WP_179797620.1    Uniprot ID   A0A7Z0H846
Organism   Psychrobacter sp. ER1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2637374..2648426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBWA_RS12255 (ACOBWA_12265) - 2637417..2639303 (+) 1887 WP_201605690.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACOBWA_RS12260 (ACOBWA_12270) - 2639349..2640276 (-) 928 Protein_2408 DUF2628 domain-containing protein -
  ACOBWA_RS12265 (ACOBWA_12275) trmB 2640478..2641317 (+) 840 WP_420229511.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACOBWA_RS12270 (ACOBWA_12280) recA 2642374..2643426 (+) 1053 WP_179797620.1 recombinase RecA Machinery gene
  ACOBWA_RS12275 (ACOBWA_12285) - 2643805..2644557 (+) 753 WP_420229512.1 regulatory protein RecX -
  ACOBWA_RS12280 (ACOBWA_12290) - 2644737..2645450 (-) 714 WP_420229513.1 YidB family protein -
  ACOBWA_RS12285 (ACOBWA_12295) - 2645692..2646150 (-) 459 WP_420229514.1 hypothetical protein -
  ACOBWA_RS12290 (ACOBWA_12300) - 2646203..2646484 (-) 282 WP_057761419.1 succinate dehydrogenase assembly factor 2 -
  ACOBWA_RS12295 (ACOBWA_12305) folP 2646605..2647498 (-) 894 WP_420229515.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37646.92 Da        Isoelectric Point: 4.8743

>NTDB_id=1110395 ACOBWA_RS12270 WP_179797620.1 2642374..2643426(+) (recA) [Psychrobacter sp. ER1]
MDDNKAKALKAALGQIEKQFGKNTIMHLGDDSAIMDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGTCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAIDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAQEIE
DKIRDEKLGTKKNSKADETEDAEQASEPVQ

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1110395 ACOBWA_RS12270 WP_179797620.1 2642374..2643426(+) (recA) [Psychrobacter sp. ER1]
ATGGACGACAATAAAGCCAAAGCCCTCAAAGCGGCATTAGGTCAAATCGAAAAGCAATTTGGTAAAAACACCATCATGCA
TCTAGGCGATGACTCGGCCATTATGGATGTCGACGTGGTCTCTACAGGCTCTCTAGGATTAGACATTGCGCTTGGCATTG
GCGGTCTACCAAAAGGCCGTATCGTTGAAATTTACGGCCCAGAAAGCTCAGGTAAAACCACCATGACCCTGCAAGCTATT
GCAGAATGTCAAAAGCAAGGCGGTACCTGTGCCTTTATCGATGCTGAGCATGCGCTTGACCCTGTTTATGCACGCAAGCT
TGGGGTAAATACTGATGACTTATTGCTCTCGCAGCCTGACAATGGCGAGCAAGCACTTGAAATCACCGATATGTTGGTAC
GCTCAGGCGCGATCGACATGATTGTAATTGATTCAGTAGCCGCCTTGACGCCACGTGCAGAAATTGAAGGTGAAATGGGT
GACTCACACATGGGTCTGCAAGCGCGCCTGATGAGCCAAGCCCTACGTAAAATCACTGGTAACGCCAAACGCTCTAACTG
TATGGTGGTGTTTATCAACCAGATTCGTATGAAAATTGGTGTTATGTTCGGTAGCCCTGAGACCACAACTGGTGGTAACG
CGCTGAAATTCTACGCCTCTGTACGTATGGATATTCGTCGCATTGGTGCGGTCAAAAACGGTGATGAAATCATCGGTAAC
CAGACCCGTGTCAAAGTTATCAAAAACAAAATGGCACCACCTTTCCGCCAAGCTGAGTTCGAAATTACTTACGGTGAAGG
TACGAATCACTTAGCCGAAGTTATCGACTTAGGCGTAGAGATTGGAGCTGTTGGCAAAGCAGGATCTTGGTACAGCTATG
GCGACGAAAAAATCGGTCAAGGTAAAGCCAACTCTGTGCTTTTCTTAAAAGAGAACCCTGCCATTGCTCAAGAAATCGAA
GACAAGATTCGTGACGAAAAGCTTGGTACAAAGAAAAATAGCAAAGCCGACGAAACTGAAGATGCAGAACAGGCTTCTGA
ACCTGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z0H846

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

76.968

98

0.754
  recA Acinetobacter baumannii D1279779

76.453

98.286

0.751
  recA Pseudomonas stutzeri DSM 10701

72.917

96

0.7
  recA Glaesserella parasuis strain SC1401

67.614

100

0.68
  recA Vibrio cholerae strain A1552

69.591

97.714

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.591

97.714

0.68
  recA Ralstonia pseudosolanacearum GMI1000

69.301

94

0.651
  recA Neisseria gonorrhoeae strain FA1090

70.062

92.571

0.649
  recA Neisseria gonorrhoeae MS11

70.062

92.571

0.649
  recA Neisseria gonorrhoeae MS11

70.062

92.571

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.951

93.143

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.09

95.714

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.385

92.857

0.589
  recA Helicobacter pylori strain NCTC11637

63.19

93.143

0.589
  recA Helicobacter pylori 26695

62.883

93.143

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.429

0.566
  recA Streptococcus mutans UA159

55.714

100

0.557
  recA Streptococcus pneumoniae TIGR4

56.034

99.429

0.557
  recA Streptococcus pneumoniae Rx1

56.034

99.429

0.557
  recA Streptococcus pneumoniae D39

56.034

99.429

0.557
  recA Streptococcus pneumoniae R6

56.034

99.429

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.248

92

0.554
  recA Streptococcus mitis NCTC 12261

58.642

92.571

0.543
  recA Streptococcus mitis SK321

58.333

92.571

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.075

92

0.534
  recA Streptococcus pyogenes NZ131

57.362

93.143

0.534

Multiple sequence alignment