Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACKTT9_RS22450 Genome accession   NZ_AP038372
Coordinates   5004447..5005490 (-) Length   347 a.a.
NCBI ID   WP_315951015.1    Uniprot ID   -
Organism   Paenibacillus sp. P36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4999447..5010490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTT9_RS22430 (PAENIP36_44360) - 5000465..5000725 (-) 261 WP_028558349.1 stage V sporulation protein S -
  ACKTT9_RS22435 (PAENIP36_44370) - 5000839..5001633 (-) 795 WP_127450942.1 TIGR00282 family metallophosphoesterase -
  ACKTT9_RS22440 (PAENIP36_44380) rny 5001751..5003289 (-) 1539 WP_145656332.1 ribonuclease Y -
  ACKTT9_RS22445 (PAENIP36_44390) - 5003677..5004366 (-) 690 WP_407867712.1 regulatory protein RecX -
  ACKTT9_RS22450 (PAENIP36_44400) recA 5004447..5005490 (-) 1044 WP_315951015.1 recombinase RecA Machinery gene
  ACKTT9_RS22455 (PAENIP36_44410) - 5005663..5006913 (-) 1251 WP_407867713.1 competence/damage-inducible protein A -
  ACKTT9_RS22460 (PAENIP36_44420) pgsA 5006955..5007542 (-) 588 WP_127450952.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKTT9_RS22465 (PAENIP36_44430) rimO 5007539..5008867 (-) 1329 WP_407867714.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACKTT9_RS22470 (PAENIP36_44440) - 5008995..5009486 (-) 492 WP_127450956.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37558.78 Da        Isoelectric Point: 4.9041

>NTDB_id=111030 ACKTT9_RS22450 WP_315951015.1 5004447..5005490(-) (recA) [Paenibacillus sp. P36]
MTDRRAALDNALRQIEKQFGKGSIMKLGESTHMQVETISSGALALDIALGIGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKVGGQAAFIDAEHALDPSYASKLGINIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIETIKQGNDMVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIATEMDIVNKSGAWYSYEGERLGQGRENAKQFLKDNKAIAETIEQK
IRENSNLIVAVGPNVDEEDDELEAAFE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=111030 ACKTT9_RS22450 WP_315951015.1 5004447..5005490(-) (recA) [Paenibacillus sp. P36]
TTGACAGACCGTCGCGCAGCACTTGATAATGCATTACGACAAATTGAGAAACAGTTCGGTAAAGGCTCCATCATGAAGCT
TGGAGAATCAACGCATATGCAAGTTGAGACGATTTCAAGCGGAGCGTTAGCCCTTGATATTGCACTAGGAATAGGTGGAT
TCCCACGCGGAAGAATTATTGAAGTATACGGACCTGAATCCTCAGGTAAAACAACAGTAGCTTTACATGCGATCGCTGAA
GTCCAGAAGGTTGGCGGACAAGCTGCATTTATCGATGCAGAGCACGCGTTGGATCCTTCTTATGCAAGTAAGCTCGGCAT
TAACATAGATGAGCTGTTGCTCTCTCAACCTGATACCGGTGAGCAAGCTCTAGAGATCGCAGAAGCGCTTGTAAGAAGCG
GCGCGGTAGATATTATCGTTATCGACTCTGTAGCGGCACTAGTACCTAAAGCAGAGATCGAAGGCGAAATGGGAGACTCT
CACGTGGGTCTGCAAGCACGTCTGATGTCTCAAGCACTTCGTAAGCTATCTGGTGCAATTAACAAATCCAAGGTTATTGC
GATTTTCATTAACCAGTTGCGTGAGAAGGTCGGCGTTATGTTTGGAAACCCGGAGACAACGCCTGGTGGCCGTGCACTGA
AGTTCTACTCCTCCGTTCGACTGGATGTTCGTCGCATAGAAACCATCAAGCAAGGTAACGATATGGTCGGTAACCGCACG
AGGATTAAGGTCGTTAAGAATAAAGTAGCTCCTCCGTTCAAACAAGCGGAAGTAGATATTATGTACGGTGAAGGAATCTC
ACGTGAAGGCAGTATCATTGATATCGCAACTGAGATGGATATCGTGAATAAAAGCGGAGCTTGGTATTCCTATGAGGGCG
AACGTTTAGGCCAAGGTCGTGAAAATGCTAAGCAATTCTTGAAAGATAACAAAGCAATTGCCGAAACGATCGAGCAAAAA
ATCCGTGAAAACAGCAATTTGATTGTTGCTGTCGGACCAAATGTGGACGAGGAAGACGATGAGTTAGAAGCGGCTTTCGA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.18

94.236

0.784
  recA Latilactobacillus sakei subsp. sakei 23K

75.312

92.219

0.695
  recA Streptococcus pneumoniae TIGR4

67.055

98.847

0.663
  recA Streptococcus pneumoniae Rx1

67.055

98.847

0.663
  recA Streptococcus pneumoniae D39

67.055

98.847

0.663
  recA Streptococcus pneumoniae R6

67.055

98.847

0.663
  recA Streptococcus mutans UA159

68.788

95.101

0.654
  recA Streptococcus mitis NCTC 12261

68.788

95.101

0.654
  recA Streptococcus mitis SK321

68.485

95.101

0.651
  recA Streptococcus pyogenes NZ131

69.444

93.372

0.648
  recA Lactococcus lactis subsp. cremoris KW2

66.667

95.101

0.634
  recA Acinetobacter baumannii D1279779

62.757

98.271

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

92.507

0.617
  recA Vibrio cholerae strain A1552

66.667

92.507

0.617
  recA Glaesserella parasuis strain SC1401

61.047

99.135

0.605
  recA Ralstonia pseudosolanacearum GMI1000

67.742

89.337

0.605
  recA Acinetobacter baylyi ADP1

60.405

99.712

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.236

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.176

97.983

0.599
  recA Neisseria gonorrhoeae MS11

66.452

89.337

0.594
  recA Neisseria gonorrhoeae MS11

66.452

89.337

0.594
  recA Neisseria gonorrhoeae strain FA1090

66.452

89.337

0.594
  recA Helicobacter pylori 26695

60.234

98.559

0.594
  recA Helicobacter pylori strain NCTC11637

60.234

98.559

0.594
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.559

92.795

0.562

Multiple sequence alignment