Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACN079_RS13660 | Genome accession | NZ_CP184478 |
| Coordinates | 2992843..2993895 (+) | Length | 350 a.a. |
| NCBI ID | WP_003198351.1 | Uniprot ID | A0A1I5E008 |
| Organism | Pseudomonas sp. ABY48 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2965712..2999781 | 2992843..2993895 | within | 0 |
Gene organization within MGE regions
Location: 2965712..2999781
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN079_RS13490 (ACN079_13490) | - | 2965712..2966446 (+) | 735 | WP_003198297.1 | LexA family transcriptional regulator | - |
| ACN079_RS13495 (ACN079_13495) | - | 2966964..2967314 (+) | 351 | WP_420235116.1 | phage holin family protein | - |
| ACN079_RS13500 (ACN079_13500) | - | 2967351..2967863 (+) | 513 | WP_420235117.1 | hypothetical protein | - |
| ACN079_RS13505 (ACN079_13505) | - | 2967867..2968478 (+) | 612 | WP_420235118.1 | phage baseplate assembly protein V | - |
| ACN079_RS13510 (ACN079_13510) | - | 2968490..2968822 (+) | 333 | WP_018607976.1 | hypothetical protein | - |
| ACN079_RS13515 (ACN079_13515) | - | 2968819..2969814 (+) | 996 | WP_420235119.1 | baseplate J/gp47 family protein | - |
| ACN079_RS13520 (ACN079_13520) | - | 2969811..2970446 (+) | 636 | WP_420235120.1 | phage tail protein I | - |
| ACN079_RS13525 (ACN079_13525) | - | 2970447..2972339 (+) | 1893 | WP_420235121.1 | phage tail protein | - |
| ACN079_RS13530 (ACN079_13530) | - | 2972342..2972770 (+) | 429 | WP_420235122.1 | phage tail assembly chaperone | - |
| ACN079_RS13535 (ACN079_13535) | - | 2972871..2973080 (+) | 210 | WP_420235123.1 | hypothetical protein | - |
| ACN079_RS13540 (ACN079_13540) | - | 2973083..2974249 (+) | 1167 | WP_420235124.1 | phage tail protein | - |
| ACN079_RS13545 (ACN079_13545) | - | 2974249..2974755 (+) | 507 | WP_420235125.1 | phage major tail tube protein | - |
| ACN079_RS13550 (ACN079_13550) | - | 2974894..2975460 (+) | 567 | WP_420235126.1 | phage tail assembly protein | - |
| ACN079_RS13555 (ACN079_13555) | - | 2975589..2977763 (+) | 2175 | WP_420235127.1 | phage tail tape measure protein | - |
| ACN079_RS13560 (ACN079_13560) | - | 2977763..2978146 (+) | 384 | WP_038857206.1 | phage tail protein | - |
| ACN079_RS13565 (ACN079_13565) | - | 2978139..2978351 (+) | 213 | WP_063322730.1 | tail protein X | - |
| ACN079_RS13570 (ACN079_13570) | - | 2978361..2979377 (+) | 1017 | WP_420235128.1 | phage late control D family protein | - |
| ACN079_RS13575 (ACN079_13575) | - | 2979443..2980027 (+) | 585 | WP_420235129.1 | phage tail terminator protein | - |
| ACN079_RS13580 (ACN079_13580) | - | 2980024..2980206 (+) | 183 | WP_003198311.1 | DUF2635 domain-containing protein | - |
| ACN079_RS13585 (ACN079_13585) | - | 2980206..2981702 (+) | 1497 | WP_420235130.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ACN079_RS13590 (ACN079_13590) | - | 2981769..2982116 (+) | 348 | WP_003198314.1 | phage tail tube protein | - |
| ACN079_RS13595 (ACN079_13595) | - | 2982113..2982409 (+) | 297 | WP_420235131.1 | phage tail assembly protein | - |
| ACN079_RS13600 (ACN079_13600) | - | 2982540..2984114 (+) | 1575 | WP_420235132.1 | phage tail protein | - |
| ACN079_RS13605 (ACN079_13605) | - | 2984101..2985339 (+) | 1239 | WP_420235133.1 | DNA circularization protein | - |
| ACN079_RS13610 (ACN079_13610) | - | 2985343..2986383 (+) | 1041 | WP_420235134.1 | phage baseplate assembly protein | - |
| ACN079_RS13615 (ACN079_13615) | - | 2986466..2986975 (+) | 510 | WP_420235135.1 | phage baseplate assembly protein V | - |
| ACN079_RS13620 (ACN079_13620) | - | 2986975..2987373 (+) | 399 | WP_420235389.1 | phage GP46 family protein | - |
| ACN079_RS13625 (ACN079_13625) | - | 2987363..2988403 (+) | 1041 | WP_420235136.1 | baseplate J/gp47 family protein | - |
| ACN079_RS13630 (ACN079_13630) | - | 2988391..2988990 (+) | 600 | WP_420235137.1 | YmfQ family protein | - |
| ACN079_RS13635 (ACN079_13635) | - | 2989002..2990267 (+) | 1266 | WP_420235138.1 | phage tail protein | - |
| ACN079_RS13640 (ACN079_13640) | - | 2990335..2990997 (-) | 663 | WP_420235139.1 | hypothetical protein | - |
| ACN079_RS13645 (ACN079_13645) | - | 2991107..2991670 (+) | 564 | WP_420235140.1 | glycoside hydrolase family 19 protein | - |
| ACN079_RS13650 (ACN079_13650) | - | 2991652..2992188 (+) | 537 | WP_420235141.1 | lysis system i-spanin subunit Rz | - |
| ACN079_RS13655 (ACN079_13655) | - | 2992259..2992759 (+) | 501 | WP_420235142.1 | CinA family protein | - |
| ACN079_RS13660 (ACN079_13660) | recA | 2992843..2993895 (+) | 1053 | WP_003198351.1 | recombinase RecA | Machinery gene |
| ACN079_RS13665 (ACN079_13665) | recX | 2993904..2994371 (+) | 468 | WP_420235143.1 | recombination regulator RecX | - |
| ACN079_RS13670 (ACN079_13670) | - | 2994418..2995536 (-) | 1119 | WP_420235144.1 | TIGR00730 family Rossman fold protein | - |
| ACN079_RS13675 (ACN079_13675) | - | 2996001..2996195 (+) | 195 | WP_058546692.1 | hypothetical protein | - |
| ACN079_RS13680 (ACN079_13680) | - | 2996196..2996618 (-) | 423 | WP_420235145.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| ACN079_RS13685 (ACN079_13685) | - | 2996803..2997549 (+) | 747 | WP_420235390.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACN079_RS13690 (ACN079_13690) | erdR | 2997762..2998415 (+) | 654 | WP_420235146.1 | response regulator transcription factor ErdR | - |
| ACN079_RS13695 (ACN079_13695) | - | 2998488..2998850 (+) | 363 | WP_420235147.1 | diacylglycerol kinase | - |
| ACN079_RS13700 (ACN079_13700) | - | 2998855..2999781 (-) | 927 | WP_420235148.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37232.69 Da Isoelectric Point: 5.5226
>NTDB_id=1108415 ACN079_RS13660 WP_003198351.1 2992843..2993895(+) (recA) [Pseudomonas sp. ABY48]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANRETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANRETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=1108415 ACN079_RS13660 WP_003198351.1 2992843..2993895(+) (recA) [Pseudomonas sp. ABY48]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTGACCCTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCTTTCGTCGATGCCGAACACGCCCTGGACCCGGAATATGCCGGCAAGCTGGG
CGTTAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTCGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCAGCACTGGTGCCAAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGTCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGCCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTTGTCGGCAGCGAA
ACCCGGGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTATTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAGTCGCCGCCGCCCTTGAGAAG
CAACTGCGTGACAAGCTGTTGAGCCCGGTGGCAGACGTCAAGTCCGTGGCTAATCGCGAGACCGCTGACGACCTGGCTGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTGACCCTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCTTTCGTCGATGCCGAACACGCCCTGGACCCGGAATATGCCGGCAAGCTGGG
CGTTAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTCGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCAGCACTGGTGCCAAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAATGCCAACTGTCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGCCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTTGTCGGCAGCGAA
ACCCGGGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTATTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAGTCGCCGCCGCCCTTGAGAAG
CAACTGCGTGACAAGCTGTTGAGCCCGGTGGCAGACGTCAAGTCCGTGGCTAATCGCGAGACCGCTGACGACCTGGCTGA
CGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.