Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN4ZX_RS11255 Genome accession   NZ_CP183962
Coordinates   2416137..2417216 (+) Length   359 a.a.
NCBI ID   WP_420002807.1    Uniprot ID   -
Organism   Arenibacterium sp. LLYu02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411137..2422216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN4ZX_RS11240 (ACN4ZX_11240) - 2411761..2412936 (+) 1176 WP_420002805.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACN4ZX_RS11245 (ACN4ZX_11245) - 2413033..2415339 (+) 2307 WP_420002806.1 ATP-binding protein -
  ACN4ZX_RS11250 (ACN4ZX_11250) - 2415346..2415942 (-) 597 WP_420005934.1 gamma-glutamyl kinase -
  ACN4ZX_RS11255 (ACN4ZX_11255) recA 2416137..2417216 (+) 1080 WP_420002807.1 recombinase RecA Machinery gene
  ACN4ZX_RS11260 (ACN4ZX_11260) - 2417323..2418201 (+) 879 WP_420002808.1 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase -
  ACN4ZX_RS11265 (ACN4ZX_11265) - 2418217..2418762 (+) 546 WP_420002809.1 hypothetical protein -
  ACN4ZX_RS11270 (ACN4ZX_11270) alaS 2418893..2421544 (+) 2652 WP_420002810.1 alanine--tRNA ligase -
  ACN4ZX_RS11275 (ACN4ZX_11275) - 2421640..2421927 (+) 288 WP_420002811.1 DUF1330 domain-containing protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38731.23 Da        Isoelectric Point: 4.7534

>NTDB_id=1107375 ACN4ZX_RS11255 WP_420002807.1 2416137..2417216(+) (recA) [Arenibacterium sp. LLYu02]
MADLLTMKDDKKSSDKQKALESALAQIERQFGKGSIMKLGDGGALQEIEASSTGSLGLDIALGIGGLPMGRIVEIYGPES
SGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAAL
TPKSELEGDMGDSSVGVQARLMSQAMRKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIG
SIKDRDEVVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGRENAKQYL
RDNTRIALEIEDKIRGAHGLDFDMPSMNEDDDDILAMDD

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1107375 ACN4ZX_RS11255 WP_420002807.1 2416137..2417216(+) (recA) [Arenibacterium sp. LLYu02]
ATGGCGGATCTATTGACCATGAAGGACGACAAGAAGAGCAGCGACAAGCAGAAGGCTCTGGAAAGCGCGCTCGCCCAGAT
CGAACGGCAGTTCGGCAAGGGCTCGATCATGAAACTGGGCGACGGTGGCGCCCTGCAAGAGATCGAGGCGAGCTCCACCG
GCTCTCTGGGCCTTGATATCGCGCTTGGCATTGGCGGTCTGCCGATGGGCCGGATCGTGGAGATTTACGGGCCGGAAAGC
TCGGGTAAGACCACGCTGACGCTGCACTGCATTGCGGAACAGCAGAAAAAAGGCGGCGTCTGCGCCTTTGTCGACGCGGA
ACACGCGCTGGACCCGCAATATGCGAAAAAGCTGGGCGTGGATCTTGATGAGCTGCTGATCTCACAGCCCGACACCGGCG
AGCAAGCCCTTGAAATCACCGATACTTTGGTGCGCTCCGGCGCGGTCAATATGGTGATCGTCGACTCCGTAGCGGCCCTG
ACGCCGAAGTCGGAACTTGAAGGCGACATGGGCGACAGCAGCGTCGGCGTGCAGGCCCGTCTGATGAGCCAGGCGATGCG
CAAGCTGACCGGTTCCATCAGCCGCTCCAAATGTATGGTGATCTTCATCAACCAGATTCGGATGAAGATCGGCGTGATGT
TCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTATTCCTCCGTGCGTCTCGATATCCGTCGCATCGGC
TCCATCAAGGATCGCGATGAGGTGGTGGGCAACACGACCCGCGTGAAGGTGGTTAAAAACAAGGTCGCGCCGCCGTTCAA
ACAGGTTGAATTCGACATCATGTATGGCGAAGGCATCTCTAAGATGGGCGAGTTGTTGGACCTTGGCGTTGCGGCCGGCG
TGGTCAACAAGTCCGGCGCTTGGTTCTCTTACGGGGACGAGCGGATCGGGCAGGGCCGTGAAAATGCCAAACAATATCTG
CGGGACAACACCCGGATCGCGCTCGAGATCGAGGATAAGATCCGCGGCGCCCATGGGCTTGATTTCGATATGCCAAGCAT
GAACGAGGACGATGACGACATCCTGGCCATGGATGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.171

92.758

0.66
  recA Glaesserella parasuis strain SC1401

69.501

94.986

0.66
  recA Neisseria gonorrhoeae MS11

67.742

94.986

0.643
  recA Neisseria gonorrhoeae strain FA1090

67.742

94.986

0.643
  recA Neisseria gonorrhoeae MS11

67.742

94.986

0.643
  recA Pseudomonas stutzeri DSM 10701

70.717

89.415

0.632
  recA Vibrio cholerae strain A1552

69.782

89.415

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.782

89.415

0.624
  recA Acinetobacter baumannii D1279779

69.47

89.415

0.621
  recA Acinetobacter baylyi ADP1

69.159

89.415

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

67.073

91.365

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.564

90.808

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.422

94.429

0.599
  recA Helicobacter pylori strain NCTC11637

63.798

93.872

0.599
  recA Helicobacter pylori 26695

63.798

93.872

0.599
  recA Lactococcus lactis subsp. cremoris KW2

61.607

93.593

0.577
  recA Streptococcus pneumoniae Rx1

60.234

95.265

0.574
  recA Streptococcus pneumoniae TIGR4

60.234

95.265

0.574
  recA Streptococcus pneumoniae R6

60.234

95.265

0.574
  recA Streptococcus pneumoniae D39

60.234

95.265

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

59.195

96.936

0.574
  recA Streptococcus pyogenes NZ131

57.91

98.607

0.571
  recA Streptococcus mitis NCTC 12261

61.377

93.036

0.571
  recA Streptococcus mitis SK321

61.078

93.036

0.568
  recA Streptococcus mutans UA159

60

91.922

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

90.808

0.535

Multiple sequence alignment