Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLKM0_RS05980 Genome accession   NZ_CP183907
Coordinates   1262145..1263188 (-) Length   347 a.a.
NCBI ID   WP_005178495.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257145..1268188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS05950 - 1257674..1258075 (+) 402 WP_180175210.1 septum formation initiator family protein -
  ACLKM0_RS05955 ispD 1258035..1258772 (+) 738 WP_180175211.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACLKM0_RS05960 rodA 1258879..1260015 (+) 1137 WP_005178500.1 rod shape-determining protein RodA -
  ACLKM0_RS05965 - 1260063..1260917 (-) 855 WP_160243063.1 YbgF trimerization domain-containing protein -
  ACLKM0_RS05975 - 1261444..1262055 (-) 612 WP_005178497.1 regulatory protein RecX -
  ACLKM0_RS05980 recA 1262145..1263188 (-) 1044 WP_005178495.1 recombinase RecA Machinery gene
  ACLKM0_RS05985 - 1263334..1263774 (-) 441 WP_005178493.1 RNA-binding S4 domain-containing protein -
  ACLKM0_RS05990 - 1263767..1264453 (-) 687 WP_180036790.1 HAD-IA family hydrolase -
  ACLKM0_RS05995 - 1264466..1265323 (+) 858 WP_005178490.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  ACLKM0_RS06000 - 1265379..1266113 (+) 735 WP_005178488.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37750.17 Da        Isoelectric Point: 4.9580

>NTDB_id=1107123 ACLKM0_RS05980 WP_005178495.1 1262145..1263188(-) (recA) [Acinetobacter indicus strain M3_NDM]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGEKIGQGKNNTIRHLEEHPELAQTIEK
LIREQLLTTGNVVEEKDEEEPDFSLDL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1107123 ACLKM0_RS05980 WP_005178495.1 1262145..1263188(-) (recA) [Acinetobacter indicus strain M3_NDM]
ATGGATGAGAATAAAAGCAAGGCGCTAAATGCTGCCCTAAGCCAGATTGAAAAACAGTTTGGTAAAAACACAGTAATGCG
TCTTGGTGACAATACCGTACAGGCTGTAGAAGCAGTATCTACCGGTTCATTAACGCTGGATATTGCGCTCGGTATTGGCG
GTTTACCCAAAGGCCGTATTATTGAAATTTATGGCCCTGAATCTTCAGGTAAAACCACAATGACCCTGCAAGCCATTGCG
GAATGTCAAAAAGCCGGCGGCACCTGTGCCTTTATTGATGCCGAACATGCTCTTGATCCTCAATATGCGCGCAAACTGGG
TGTAGATATTGACAACCTGCTGGTTTCACAACCGGACAACGGTGAACAGGCACTGGAAATTGCCGACATGCTGGTACGTT
CAGGCGCAATTGACCTGATCGTCGTCGACTCTGTTGCGGCCCTGACCCCTCGTGCCGAAATTGAAGGCGAAATGGGTGAT
TCACATATGGGCCTGCAGGCTCGTCTGATGAGCCAGGCGCTACGTAAAATTACCGGTAATGCCAAACGTTCTAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTAGCCCGGAAACCACCACTGGTGGTAACGCAC
TGAAATTCTATGCCTCAGTACGTTTAGATATTCGCCGTGTTGGTCAGGTTAAAGAAGGTGACGAAATTGTCGGTTCTGAA
ACCAAAGTAAAAGTGGTGAAGAACAAGATGGCACCTCCGTTCCGTGAAGCGCTGTTCCAGATTCTGTACGGCAAAGGTGT
GAACCATTTAGGTGAACTGGTCGACCTGGCTGTGCAGCAAGAGATTGTGCAAAAAGCTGGTGCTTGGTATTCATATCAAG
GTGAAAAGATTGGCCAAGGTAAAAACAATACCATTCGCCATCTGGAAGAACATCCTGAACTGGCACAGACCATTGAAAAA
CTGATTCGTGAACAACTGTTAACCACAGGCAATGTGGTGGAAGAAAAAGACGAAGAGGAACCTGACTTTTCATTAGATCT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.805

100

0.911
  recA Acinetobacter baylyi ADP1

89.884

99.712

0.896
  recA Pseudomonas stutzeri DSM 10701

75.988

94.813

0.72
  recA Vibrio cholerae strain A1552

72.892

95.677

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.892

95.677

0.697
  recA Glaesserella parasuis strain SC1401

70.695

95.389

0.674
  recA Ralstonia pseudosolanacearum GMI1000

72.611

90.49

0.657
  recA Neisseria gonorrhoeae MS11

64.265

100

0.643
  recA Neisseria gonorrhoeae MS11

64.265

100

0.643
  recA Neisseria gonorrhoeae strain FA1090

64.265

100

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

97.983

0.62
  recA Helicobacter pylori strain NCTC11637

62.537

97.695

0.611
  recA Helicobacter pylori 26695

62.242

97.695

0.608
  recA Streptococcus pneumoniae TIGR4

61.765

97.983

0.605
  recA Streptococcus pneumoniae Rx1

61.765

97.983

0.605
  recA Streptococcus pneumoniae D39

61.765

97.983

0.605
  recA Streptococcus pneumoniae R6

61.765

97.983

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.389

0.602
  recA Streptococcus mutans UA159

59.942

100

0.599
  recA Streptococcus pyogenes NZ131

58.475

100

0.597
  recA Streptococcus mitis SK321

60.117

98.271

0.591
  recA Streptococcus mitis NCTC 12261

60.117

98.271

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.354

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.795

0.579
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545

Multiple sequence alignment