Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   strainIA91_RS06365 Genome accession   NZ_AP035449
Coordinates   1460508..1461530 (-) Length   340 a.a.
NCBI ID   WP_400165941.1    Uniprot ID   -
Organism   Fidelibacter multiformis strain IA91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1455508..1466530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  strainIA91_RS06350 (FMIA91_12250) - 1456726..1458762 (-) 2037 WP_400165938.1 alpha-amylase/4-alpha-glucanotransferase domain-containing protein -
  strainIA91_RS06355 (FMIA91_12260) gap 1458811..1459809 (-) 999 WP_400165939.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  strainIA91_RS06360 (FMIA91_12270) - 1459888..1460511 (-) 624 WP_400165940.1 regulatory protein RecX -
  strainIA91_RS06365 (FMIA91_12280) recA 1460508..1461530 (-) 1023 WP_400165941.1 recombinase RecA Machinery gene
  strainIA91_RS06370 (FMIA91_12290) thpR 1461532..1462113 (-) 582 WP_400165942.1 RNA 2',3'-cyclic phosphodiesterase -
  strainIA91_RS06375 (FMIA91_12300) - 1462110..1463339 (-) 1230 WP_400165944.1 competence/damage-inducible protein A -
  strainIA91_RS06380 (FMIA91_12310) - 1463336..1463815 (-) 480 WP_400165945.1 phosphatidylglycerophosphatase A -
  strainIA91_RS06385 (FMIA91_12320) pgsA 1463793..1464389 (-) 597 WP_400165946.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  strainIA91_RS06390 (FMIA91_12330) recR 1464379..1464996 (-) 618 WP_400165947.1 recombination mediator RecR -
  strainIA91_RS06395 (FMIA91_12340) - 1464996..1465319 (-) 324 WP_400165948.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36573.78 Da        Isoelectric Point: 5.5344

>NTDB_id=110697 strainIA91_RS06365 WP_400165941.1 1460508..1461530(-) (recA) [Fidelibacter multiformis strain IA91]
MGSQDREKALEMAISQIDRQFGKGSIMKMGEDRVVIPVSVISTGSLSLDAAIGVGGIPRGRITEIFGPESSGKTTLALQC
IAEAQKNGGYAAFIDAEHALDITYAQNLGVNINNLLVSQPDNGEQALEITETLVRSNALDIIVVDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGAVSKSRIAVIFINQIREKIGVMFGNPETTTGGRALKFYTSVRIDVRRIGSIKSGEDVLG
NRTKVKIVKNKVAPPFKSCEFDIMYGKGISYEGDVLDLATTLDIVTKSGSWYSYGDERIGQGRENAKAYLTEHSEVLKTI
ADEVKSALGMTPPPPPEKES

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=110697 strainIA91_RS06365 WP_400165941.1 1460508..1461530(-) (recA) [Fidelibacter multiformis strain IA91]
ATGGGTTCTCAAGACAGAGAAAAAGCATTGGAAATGGCCATATCCCAGATTGATCGTCAGTTTGGGAAAGGGTCCATTAT
GAAAATGGGGGAAGACCGGGTTGTGATACCGGTATCGGTAATATCCACCGGTTCATTGAGCCTTGATGCGGCTATTGGTG
TGGGGGGTATTCCACGGGGAAGAATCACAGAAATTTTCGGACCTGAATCATCCGGTAAAACGACATTGGCCCTCCAGTGT
ATTGCTGAAGCGCAGAAAAACGGCGGATATGCTGCCTTTATTGATGCGGAACATGCACTGGATATTACCTATGCCCAGAA
TCTGGGTGTGAATATCAATAATCTCCTGGTTTCCCAGCCCGACAATGGAGAACAGGCCCTGGAAATCACAGAAACCCTTG
TCCGGAGCAACGCACTGGATATTATTGTCGTGGATTCAGTAGCGGCGTTGGTTCCCCGGGCTGAAATTGAAGGGGAAATG
GGGGACAGCCACGTGGGATTGCAGGCTCGTCTTATGAGTCAGGCCCTGAGAAAGTTAACGGGTGCTGTTAGCAAATCACG
TATTGCAGTTATATTTATTAACCAGATCCGGGAAAAAATCGGTGTGATGTTTGGAAATCCCGAAACCACAACCGGAGGAC
GGGCTTTGAAATTCTATACATCTGTCCGTATTGATGTCCGCCGGATTGGCTCCATTAAGAGTGGTGAGGATGTTCTGGGT
AACCGGACAAAGGTTAAAATCGTGAAAAACAAAGTAGCTCCTCCCTTTAAAAGCTGTGAATTTGACATTATGTACGGGAA
AGGCATATCCTATGAAGGGGATGTGCTGGATCTGGCGACAACCCTGGATATCGTGACAAAATCCGGATCCTGGTACAGCT
ATGGAGACGAACGTATCGGTCAGGGACGGGAAAATGCCAAAGCCTATCTTACAGAACATTCTGAGGTGCTTAAAACCATT
GCAGATGAAGTGAAATCGGCTTTGGGAATGACACCACCACCGCCGCCTGAAAAGGAATCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

95.882

0.653
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.055

96.176

0.635
  recA Latilactobacillus sakei subsp. sakei 23K

64.371

98.235

0.632
  recA Ralstonia pseudosolanacearum GMI1000

67.405

92.941

0.626
  recA Helicobacter pylori 26695

61.404

100

0.618
  recA Helicobacter pylori strain NCTC11637

61.111

100

0.615
  recA Neisseria gonorrhoeae strain FA1090

63.415

96.471

0.612
  recA Neisseria gonorrhoeae MS11

63.415

96.471

0.612
  recA Neisseria gonorrhoeae MS11

63.415

96.471

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

97.647

0.606
  recA Streptococcus pneumoniae Rx1

62.424

97.059

0.606
  recA Streptococcus pneumoniae D39

62.424

97.059

0.606
  recA Streptococcus pneumoniae R6

62.424

97.059

0.606
  recA Streptococcus pneumoniae TIGR4

62.424

97.059

0.606
  recA Vibrio cholerae strain A1552

63.077

95.588

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.077

95.588

0.603
  recA Pseudomonas stutzeri DSM 10701

62.31

96.765

0.603
  recA Streptococcus mitis SK321

61.818

97.059

0.6
  recA Acinetobacter baumannii D1279779

62.769

95.588

0.6
  recA Streptococcus mitis NCTC 12261

61.515

97.059

0.597
  recA Acinetobacter baylyi ADP1

62.346

95.294

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

96.176

0.594
  recA Glaesserella parasuis strain SC1401

60.79

96.765

0.588
  recA Streptococcus pyogenes NZ131

59.878

96.765

0.579
  recA Lactococcus lactis subsp. cremoris KW2

59.091

97.059

0.574
  recA Streptococcus mutans UA159

59.091

97.059

0.574

Multiple sequence alignment