Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN4IM_RS13090 Genome accession   NZ_CP183859
Coordinates   2678160..2679218 (-) Length   352 a.a.
NCBI ID   WP_022649140.1    Uniprot ID   A0A330DB80
Organism   Enterobacter hormaechei strain K1326     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2673160..2684218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN4IM_RS13075 csrA 2674405..2674590 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  ACN4IM_RS13080 alaS 2674832..2677459 (-) 2628 WP_032676479.1 alanine--tRNA ligase -
  ACN4IM_RS13085 recX 2677591..2678091 (-) 501 WP_017382782.1 recombination regulator RecX -
  ACN4IM_RS13090 recA 2678160..2679218 (-) 1059 WP_022649140.1 recombinase RecA Machinery gene
  ACN4IM_RS13095 pncC 2679308..2679805 (-) 498 WP_003862172.1 nicotinamide-nucleotide amidase -
  ACN4IM_RS13100 - 2679936..2680814 (-) 879 WP_023306807.1 metal ABC transporter substrate-binding protein -
  ACN4IM_RS13105 - 2680829..2681689 (-) 861 WP_022649142.1 metal ABC transporter permease -
  ACN4IM_RS13110 - 2681686..2682339 (-) 654 WP_022649143.1 metal ABC transporter ATP-binding protein -
  ACN4IM_RS13115 mltB 2682650..2683750 (-) 1101 WP_022649145.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37777.21 Da        Isoelectric Point: 4.8095

>NTDB_id=1106503 ACN4IM_RS13090 WP_022649140.1 2678160..2679218(-) (recA) [Enterobacter hormaechei strain K1326]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1106503 ACN4IM_RS13090 WP_022649140.1 2678160..2679218(-) (recA) [Enterobacter hormaechei strain K1326]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACTATCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACCACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCACAGCCGGACACCGGCGAGCAGGCCCTGGAAATTTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCGGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGATAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAGCAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A330DB80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

94.034

0.79
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

94.034

0.79
  recA Pseudomonas stutzeri DSM 10701

73.121

98.295

0.719
  recA Acinetobacter baumannii D1279779

74.695

93.182

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.253

98.864

0.685
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

92.045

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

94.318

0.557

Multiple sequence alignment