Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABJ974_RS03020 Genome accession   NZ_CP183840
Coordinates   687804..688805 (-) Length   333 a.a.
NCBI ID   WP_419869909.1    Uniprot ID   -
Organism   Chryseobacterium sp. SW-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 682804..693805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ974_RS02995 - 683504..683800 (+) 297 WP_419869905.1 MGMT family protein -
  ABJ974_RS03000 - 683814..684197 (-) 384 WP_419869906.1 helix-turn-helix transcriptional regulator -
  ABJ974_RS03005 - 684328..684480 (+) 153 WP_419869907.1 hypothetical protein -
  ABJ974_RS03010 - 684641..685348 (+) 708 WP_419869908.1 GLPGLI family protein -
  ABJ974_RS03015 htpG 685619..687511 (-) 1893 Protein_584 molecular chaperone HtpG -
  ABJ974_RS03020 recA 687804..688805 (-) 1002 WP_419869909.1 recombinase RecA Machinery gene
  ABJ974_RS03025 - 688976..690172 (-) 1197 WP_419869910.1 oxygenase MpaB family protein -
  ABJ974_RS03030 - 690225..691022 (-) 798 WP_419869911.1 response regulator transcription factor -
  ABJ974_RS03035 - 691135..691497 (+) 363 WP_419869912.1 hypothetical protein -
  ABJ974_RS03040 gap 691561..692565 (-) 1005 WP_419869913.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ABJ974_RS03045 pfkA 692598..693584 (-) 987 WP_419869914.1 6-phosphofructokinase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35845.17 Da        Isoelectric Point: 5.5717

>NTDB_id=1106412 ABJ974_RS03020 WP_419869909.1 687804..688805(-) (recA) [Chryseobacterium sp. SW-1]
MSNIEDKKKALALVLDKLDKTYGKGTVMTLGDNAVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVELGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1106412 ABJ974_RS03020 WP_419869909.1 687804..688805(-) (recA) [Chryseobacterium sp. SW-1]
ATGAGTAACATTGAAGATAAGAAAAAAGCACTGGCACTAGTGCTTGACAAACTAGATAAAACTTACGGAAAAGGAACTGT
AATGACATTGGGAGATAATGCTGTAGATAATACAATCGAAGTAATTCCTTCCGGATCATTAGGACTTGACATCGCTTTAG
GTGTAGGAGGATATCCAAGAGGAAGAATCATTGAAATCTACGGACCTGAATCTTCCGGTAAAACCACTTTAACCCTTCAT
GCTATTGCTGAAGCTCAGAAAGCAGGAGGAATTGCAGCGTTTATTGATGCGGAACACGCTTTCGACAGAACATATGCGGC
TAAATTAGGTATCGACCTGGAAAACCTTATCATCTCTCAGCCGGATAATGGTGAGCAGGCATTGGAAATTGCCGATAATC
TTATCCGTTCGGGAGCTATTGACATCGTTGTTATCGACTCTGTAGCCGCCCTTACTCCAAAAGCTGAAATTGAAGGTGAA
ATGGGAGATTCCAAAATGGGTCTTCATGCAAGATTGATGTCCCAGGCGTTAAGAAAGCTAACTGCTACGATTTCCAAAAC
CAAATGTACGGTGATCTTCATCAACCAGCTGAGAGAAAAAATCGGGGTTATGTTCGGAAATCCTGAAACGACTACGGGTG
GTAATGCTTTGAAATTCTATGCTTCGGTAAGAGTGGATATCAGAAAGGCAAGTGCTCCTATCAAACAGGGGGATGAAGCA
ATCGGAAGCCGTGTGAAGGTGAAAATTGTGAAAAATAAAGTAGCTCCTCCTTTCAAGCAGGCGGAATTTGATATTATGTA
TGGGGAAGGAGTTTCCAAAACGGGAGAAATTCTGGATCAGGCTGTGGAACTGGGAATTGTGAAGAAAAGCGGTTCATGGT
TCAGCTATGAAGAAACTAAATTGGGACAGGGTCGTGATGCGGTAAAAGATGTATTAAAAGACAATCCTGAATTGGCGGAA
GAACTGGAAAATAAAATTAAAGAGGAATTGAAGAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.48

100

0.805
  recA Ralstonia pseudosolanacearum GMI1000

63.501

100

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

98.198

0.637
  recA Acinetobacter baylyi ADP1

64.134

98.799

0.634
  recA Acinetobacter baumannii D1279779

64.724

97.898

0.634
  recA Glaesserella parasuis strain SC1401

64.526

98.198

0.634
  recA Helicobacter pylori strain NCTC11637

63.914

98.198

0.628
  recA Helicobacter pylori 26695

63.914

98.198

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

63.497

97.898

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.158

96.997

0.613
  recA Neisseria gonorrhoeae MS11

63.158

96.997

0.613
  recA Neisseria gonorrhoeae MS11

63.158

96.997

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.094

98.799

0.604
  recA Vibrio cholerae strain A1552

61.094

98.799

0.604
  recA Streptococcus mitis NCTC 12261

61.656

97.898

0.604
  recA Streptococcus mitis SK321

61.656

97.898

0.604
  recA Pseudomonas stutzeri DSM 10701

61.35

97.898

0.601
  recA Streptococcus pyogenes NZ131

61.162

98.198

0.601
  recA Lactococcus lactis subsp. cremoris KW2

60.736

97.898

0.595
  recA Streptococcus mutans UA159

60.245

98.198

0.592
  recA Streptococcus pneumoniae Rx1

59.756

98.498

0.589
  recA Streptococcus pneumoniae D39

59.756

98.498

0.589
  recA Streptococcus pneumoniae R6

59.756

98.498

0.589
  recA Streptococcus pneumoniae TIGR4

59.756

98.498

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

96.997

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

97.898

0.553

Multiple sequence alignment