Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNFJ7_RS04590 Genome accession   NZ_CP183770
Coordinates   969141..970211 (-) Length   356 a.a.
NCBI ID   WP_019369408.1    Uniprot ID   -
Organism   Sphingomonas sp. HT-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 964141..975211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFJ7_RS04570 (ACNFJ7_04570) - 964519..965841 (+) 1323 WP_019369404.1 dicarboxylate/amino acid:cation symporter -
  ACNFJ7_RS04575 (ACNFJ7_04575) - 965860..966486 (-) 627 WP_019369405.1 glutathione S-transferase family protein -
  ACNFJ7_RS04580 (ACNFJ7_04580) - 966590..968677 (-) 2088 WP_019369406.1 catalase -
  ACNFJ7_RS04585 (ACNFJ7_04585) - 968753..969091 (-) 339 WP_236704442.1 hypothetical protein -
  ACNFJ7_RS04590 (ACNFJ7_04590) recA 969141..970211 (-) 1071 WP_019369408.1 recombinase RecA Machinery gene
  ACNFJ7_RS04595 (ACNFJ7_04595) - 970350..971069 (+) 720 WP_019369409.1 MOSC domain-containing protein -
  ACNFJ7_RS04600 (ACNFJ7_04600) - 971153..973198 (-) 2046 WP_019369410.1 alpha/beta hydrolase family protein -
  ACNFJ7_RS04605 (ACNFJ7_04605) - 973266..973712 (-) 447 WP_173644875.1 DUF2497 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38130.65 Da        Isoelectric Point: 5.3364

>NTDB_id=1105888 ACNFJ7_RS04590 WP_019369408.1 969141..970211(-) (recA) [Sphingomonas sp. HT-1]
MAASLKVIDGNMALSTDKQKALDAALAQIDRAFGKGSAMKLGSKETMQVEAISTGSLGLDIALGVGGLPRGRVIEVYGPE
SSGKTTLALHVIAEAQKNGGVAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDEIVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKNF
LRENSEVCDRLEAAIRGRTEQVAEGLMAGPEPDDDI

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1105888 ACNFJ7_RS04590 WP_019369408.1 969141..970211(-) (recA) [Sphingomonas sp. HT-1]
ATGGCAGCATCTCTCAAGGTGATCGACGGCAACATGGCCCTTTCCACAGACAAGCAGAAGGCGCTCGACGCCGCCCTCGC
GCAGATCGATCGCGCCTTTGGCAAGGGCTCGGCGATGAAGCTGGGCTCGAAGGAAACGATGCAGGTGGAGGCGATTTCCA
CCGGCTCGCTTGGGCTGGATATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGGCGCGTGATCGAAGTCTATGGCCCGGAA
AGCTCGGGCAAGACGACGCTGGCGCTGCACGTGATCGCCGAGGCTCAAAAGAATGGCGGCGTGGCAGCCTTTGTCGACGC
CGAACACGCGCTTGATCCCGTCTATGCCAAAAAGCTCGGCGTCAACATCGATGAACTGATCGTCTCGCAGCCCGATACCG
GCGAACAGGCGCTGGAAATCACCGATACGCTGGTTCGTTCGAACGCGATCGACGTGCTGGTGGTCGATTCTGTCGCCGCA
CTTGTGCCACGGGCGGAAATCGAAGGCGAAATGGGCGACAGCCATGTGGGCCTTCAGGCGCGTTTGATGTCGCAGAGCCT
GCGCAAGCTCACGGGCTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGA
TGTACGGCAATCCGGAAACGACGACCGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTTCGTCTCGACATCCGCCGCACC
GGGCAGATCAAGGATCGCGACGAAATCGTGGGCAACTCGACGCGTGTGAAGGTCGTCAAGAACAAGGTGGCGCCGCCTTT
CAAGCAGGTCGAATTCGACATCATGTACGGCGAAGGCATTTCGAAAATCGGCGAAATCCTCGATCTCGGCGTCAAGGCAG
GCTTGGTCGAGAAGTCGGGTGCCTGGTTCAGCTATGACAGCATCCGCATCGGCCAGGGACGTGAGAACGCGAAGAACTTC
CTGCGCGAGAATTCGGAAGTCTGCGATCGGCTCGAAGCGGCGATTCGCGGCCGTACCGAGCAGGTTGCCGAAGGGCTGAT
GGCGGGGCCGGAGCCCGACGACGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.155

95.787

0.643
  recA Neisseria gonorrhoeae MS11

70.062

91.011

0.638
  recA Neisseria gonorrhoeae MS11

70.062

91.011

0.638
  recA Neisseria gonorrhoeae strain FA1090

70.062

91.011

0.638
  recA Glaesserella parasuis strain SC1401

69.906

89.607

0.626
  recA Vibrio cholerae strain A1552

69.04

90.73

0.626
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.04

90.73

0.626
  recA Acinetobacter baylyi ADP1

63.478

96.91

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.743

96.067

0.612
  recA Ralstonia pseudosolanacearum GMI1000

70.455

86.517

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

67.29

90.169

0.607
  recA Helicobacter pylori strain NCTC11637

62.248

97.472

0.607
  recA Helicobacter pylori 26695

61.96

97.472

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.951

91.573

0.604
  recA Acinetobacter baumannii D1279779

66.563

90.73

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

62.018

94.663

0.587
  recA Streptococcus pneumoniae R6

59.942

96.067

0.576
  recA Streptococcus mitis SK321

59.942

96.067

0.576
  recA Streptococcus mitis NCTC 12261

59.942

96.067

0.576
  recA Streptococcus pneumoniae Rx1

59.942

96.067

0.576
  recA Streptococcus pneumoniae D39

59.942

96.067

0.576
  recA Streptococcus pneumoniae TIGR4

59.942

96.067

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

91.854

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.806

94.101

0.553
  recA Streptococcus pyogenes NZ131

60.802

91.011

0.553
  recA Streptococcus mutans UA159

60.185

91.011

0.548

Multiple sequence alignment