Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACN2C8_RS11795 Genome accession   NZ_CP183332
Coordinates   2422840..2423904 (-) Length   354 a.a.
NCBI ID   WP_419251958.1    Uniprot ID   -
Organism   Caulobacter sp. ErkDOM-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2417840..2428904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2C8_RS11785 (ACN2C8_11785) - 2418303..2418680 (+) 378 WP_419251956.1 VOC family protein -
  ACN2C8_RS11790 (ACN2C8_11790) alaS 2418747..2421395 (-) 2649 WP_419251957.1 alanine--tRNA ligase -
  ACN2C8_RS11795 (ACN2C8_11795) recA 2422840..2423904 (-) 1065 WP_419251958.1 recombinase RecA Machinery gene
  ACN2C8_RS11800 (ACN2C8_11800) - 2424159..2425763 (+) 1605 WP_419251959.1 EAL domain-containing protein -
  ACN2C8_RS11805 (ACN2C8_11805) - 2425785..2427596 (-) 1812 WP_419255874.1 DUF885 domain-containing protein -
  ACN2C8_RS11810 (ACN2C8_11810) - 2427728..2428114 (-) 387 WP_419251960.1 nuclear transport factor 2 family protein -
  ACN2C8_RS11815 (ACN2C8_11815) - 2428185..2428712 (+) 528 WP_419251961.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 354 a.a.        Molecular weight: 37800.12 Da        Isoelectric Point: 5.3541

>NTDB_id=1105342 ACN2C8_RS11795 WP_419251958.1 2422840..2423904(-) (recA) [Caulobacter sp. ErkDOM-C]
MNQAALKLVGKEDGDKQRALEAALAQIDRAFGKGSVMKLGEKGKVEMESVSTGSLGLDIALGIGGLPKGRVIEIYGPESS
GKTTLALHVVAEVQKAGGTAAFVDAEHALDPGYAFKLGVNLDNLLVSQPDNGEQALEITDTLVRSGAVDVVVIDSVAALT
PKAEIEGEMGDSLPGLQARLMSQALRKLTGSINKTNTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGS
VKNRDEIIGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVIDKAGSWFSYNSQRIGQGRDNVREFLK
ANKDLANEIEAAVRKSSQKIEEELLVGGPEDGDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1105342 ACN2C8_RS11795 WP_419251958.1 2422840..2423904(-) (recA) [Caulobacter sp. ErkDOM-C]
ATGAACCAGGCGGCTTTGAAACTCGTGGGTAAGGAAGACGGCGACAAGCAGCGCGCGCTAGAAGCGGCGCTGGCTCAGAT
CGATCGGGCCTTTGGCAAGGGCTCGGTGATGAAGCTGGGCGAAAAGGGCAAGGTCGAGATGGAGTCCGTCTCCACCGGCT
CGCTCGGCCTCGACATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGCGGGTGATCGAGATCTACGGTCCGGAAAGCTCG
GGCAAGACCACCCTGGCCCTGCACGTGGTGGCCGAGGTCCAGAAGGCCGGCGGCACCGCCGCCTTTGTCGACGCCGAACA
CGCGCTCGATCCGGGCTATGCCTTCAAGCTGGGCGTCAATCTCGACAACCTGCTGGTCTCGCAGCCCGACAACGGCGAAC
AGGCCCTGGAAATCACCGACACCCTGGTGCGCTCGGGCGCCGTCGACGTGGTCGTCATCGACTCGGTCGCGGCCCTGACC
CCCAAGGCGGAAATCGAGGGCGAGATGGGCGACAGCCTGCCCGGCCTTCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAA
GCTGACCGGCTCGATCAACAAGACCAATACCATCGTCATCTTCATCAACCAGATCCGTCACAAGATCGGCGTGATGTACG
GCAGCCCCGAGACCACCACGGGCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCACCGGCTCT
GTGAAGAACCGCGACGAGATCATCGGCAACAATGTCCGCGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCGTTCCGCGA
GGTCGAGTTCGACATCATGTACGGCGAGGGCATTTCCAAGCTGGGCGAGATCATCGACCTGGGCGTCAAGGCCGGGGTCA
TCGACAAGGCCGGCTCGTGGTTCTCCTATAACAGTCAGCGCATCGGCCAGGGTCGCGACAATGTCCGCGAGTTCCTGAAG
GCCAACAAGGATCTGGCCAACGAGATCGAGGCGGCCGTCCGCAAGTCTTCCCAGAAGATCGAGGAAGAGCTGCTGGTCGG
CGGCCCCGAGGACGGCGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.386

93.785

0.669

  recA Glaesserella parasuis strain SC1401

69.231

91.808

0.636

  recA Neisseria gonorrhoeae MS11

69.782

90.678

0.633

  recA Neisseria gonorrhoeae MS11

69.782

90.678

0.633

  recA Neisseria gonorrhoeae strain FA1090

69.782

90.678

0.633

  recA Pseudomonas stutzeri DSM 10701

69.255

90.96

0.63

  recA Acinetobacter baumannii D1279779

66.369

94.915

0.63

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

93.503

0.627

  recA Acinetobacter baylyi ADP1

68.421

91.243

0.624

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

96.045

0.621

  recA Helicobacter pylori 26695

66.769

91.808

0.613

  recA Helicobacter pylori strain NCTC11637

66.154

91.808

0.607

  recA Bacillus subtilis subsp. subtilis str. 168

66.978

90.678

0.607

  recA Vibrio cholerae strain A1552

64.706

91.243

0.59

  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

91.243

0.59

  recA Latilactobacillus sakei subsp. sakei 23K

63.75

90.395

0.576

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

91.808

0.573

  recA Lactococcus lactis subsp. cremoris KW2

61.398

92.938

0.571

  recA Streptococcus pyogenes NZ131

61.027

93.503

0.571

  recA Streptococcus mutans UA159

59.159

94.068

0.556

  recA Streptococcus mitis NCTC 12261

60.494

91.525

0.554

  recA Streptococcus mitis SK321

60.494

91.525

0.554

  recA Streptococcus pneumoniae TIGR4

59.877

91.525

0.548

  recA Streptococcus pneumoniae D39

59.877

91.525

0.548

  recA Streptococcus pneumoniae Rx1

59.877

91.525

0.548

  recA Streptococcus pneumoniae R6

59.877

91.525

0.548


Multiple sequence alignment