Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACN2C6_RS11455 Genome accession   NZ_CP183329
Coordinates   2350715..2351779 (-) Length   354 a.a.
NCBI ID   WP_419251958.1    Uniprot ID   -
Organism   Caulobacter sp. ErkDOM-YI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2345715..2356779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2C6_RS11445 (ACN2C6_11445) - 2346178..2346555 (+) 378 WP_419251956.1 VOC family protein -
  ACN2C6_RS11450 (ACN2C6_11450) alaS 2346622..2349270 (-) 2649 WP_419251957.1 alanine--tRNA ligase -
  ACN2C6_RS11455 (ACN2C6_11455) recA 2350715..2351779 (-) 1065 WP_419251958.1 recombinase RecA Machinery gene
  ACN2C6_RS11460 (ACN2C6_11460) - 2352034..2353638 (+) 1605 WP_419251959.1 EAL domain-containing protein -
  ACN2C6_RS11465 (ACN2C6_11465) - 2353660..2355471 (-) 1812 WP_419255874.1 DUF885 domain-containing protein -
  ACN2C6_RS11470 (ACN2C6_11470) - 2355603..2355989 (-) 387 WP_419251960.1 nuclear transport factor 2 family protein -
  ACN2C6_RS11475 (ACN2C6_11475) - 2356060..2356587 (+) 528 WP_419251961.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37800.12 Da        Isoelectric Point: 5.3541

>NTDB_id=1105328 ACN2C6_RS11455 WP_419251958.1 2350715..2351779(-) (recA) [Caulobacter sp. ErkDOM-YI]
MNQAALKLVGKEDGDKQRALEAALAQIDRAFGKGSVMKLGEKGKVEMESVSTGSLGLDIALGIGGLPKGRVIEIYGPESS
GKTTLALHVVAEVQKAGGTAAFVDAEHALDPGYAFKLGVNLDNLLVSQPDNGEQALEITDTLVRSGAVDVVVIDSVAALT
PKAEIEGEMGDSLPGLQARLMSQALRKLTGSINKTNTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGS
VKNRDEIIGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVIDKAGSWFSYNSQRIGQGRDNVREFLK
ANKDLANEIEAAVRKSSQKIEEELLVGGPEDGDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1105328 ACN2C6_RS11455 WP_419251958.1 2350715..2351779(-) (recA) [Caulobacter sp. ErkDOM-YI]
ATGAACCAGGCGGCTTTGAAACTCGTGGGTAAGGAAGACGGCGACAAGCAGCGCGCGCTAGAAGCGGCGCTGGCTCAGAT
CGATCGGGCCTTTGGCAAGGGCTCGGTGATGAAGCTGGGCGAAAAGGGCAAGGTCGAGATGGAGTCCGTCTCCACCGGCT
CGCTCGGCCTCGACATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGCGGGTGATCGAGATCTACGGTCCGGAAAGCTCG
GGCAAGACCACCCTGGCCCTGCACGTGGTGGCCGAGGTCCAGAAGGCCGGCGGCACCGCCGCCTTTGTCGACGCCGAACA
CGCGCTCGATCCGGGCTATGCCTTCAAGCTGGGCGTCAATCTCGACAACCTGCTGGTCTCGCAGCCCGACAACGGCGAAC
AGGCCCTGGAAATCACCGACACCCTGGTGCGCTCGGGCGCCGTCGACGTGGTCGTCATCGACTCGGTCGCGGCCCTGACC
CCCAAGGCGGAAATCGAGGGCGAGATGGGCGACAGCCTGCCCGGCCTTCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAA
GCTGACCGGCTCGATCAACAAGACCAATACCATCGTCATCTTCATCAACCAGATCCGTCACAAGATCGGCGTGATGTACG
GCAGCCCCGAGACCACCACGGGCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCACCGGCTCT
GTGAAGAACCGCGACGAGATCATCGGCAACAATGTCCGCGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCGTTCCGCGA
GGTCGAGTTCGACATCATGTACGGCGAGGGCATTTCCAAGCTGGGCGAGATCATCGACCTGGGCGTCAAGGCCGGGGTCA
TCGACAAGGCCGGCTCGTGGTTCTCCTATAACAGTCAGCGCATCGGCCAGGGTCGCGACAATGTCCGCGAGTTCCTGAAG
GCCAACAAGGATCTGGCCAACGAGATCGAGGCGGCCGTCCGCAAGTCTTCCCAGAAGATCGAGGAAGAGCTGCTGGTCGG
CGGCCCCGAGGACGGCGACGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.386

93.785

0.669
  recA Glaesserella parasuis strain SC1401

69.231

91.808

0.636
  recA Neisseria gonorrhoeae MS11

69.782

90.678

0.633
  recA Neisseria gonorrhoeae MS11

69.782

90.678

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.782

90.678

0.633
  recA Pseudomonas stutzeri DSM 10701

69.255

90.96

0.63
  recA Acinetobacter baumannii D1279779

66.369

94.915

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

93.503

0.627
  recA Acinetobacter baylyi ADP1

68.421

91.243

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

96.045

0.621
  recA Helicobacter pylori 26695

66.769

91.808

0.613
  recA Helicobacter pylori strain NCTC11637

66.154

91.808

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

66.978

90.678

0.607
  recA Vibrio cholerae strain A1552

64.706

91.243

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

91.243

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

90.395

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

91.808

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.398

92.938

0.571
  recA Streptococcus pyogenes NZ131

61.027

93.503

0.571
  recA Streptococcus mutans UA159

59.159

94.068

0.556
  recA Streptococcus mitis NCTC 12261

60.494

91.525

0.554
  recA Streptococcus mitis SK321

60.494

91.525

0.554
  recA Streptococcus pneumoniae TIGR4

59.877

91.525

0.548
  recA Streptococcus pneumoniae D39

59.877

91.525

0.548
  recA Streptococcus pneumoniae Rx1

59.877

91.525

0.548
  recA Streptococcus pneumoniae R6

59.877

91.525

0.548

Multiple sequence alignment