Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB4855_RS01540 Genome accession   NZ_CP183312
Coordinates   317631..318677 (-) Length   348 a.a.
NCBI ID   WP_003725961.1    Uniprot ID   -
Organism   Listeria monocytogenes strain Lm-CHAMPS-BD-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 312631..323677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4855_RS01520 (AB4855_001520) - 313968..314330 (-) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -
  AB4855_RS01525 (AB4855_001525) - 314347..315150 (-) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  AB4855_RS01530 (AB4855_001530) - 315156..315653 (-) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  AB4855_RS01535 (AB4855_001535) rny 315768..317330 (-) 1563 WP_003721904.1 ribonuclease Y -
  AB4855_RS01540 (AB4855_001540) recA 317631..318677 (-) 1047 WP_003725961.1 recombinase RecA Machinery gene
  AB4855_RS01545 (AB4855_001545) cinA 318950..320194 (-) 1245 WP_003725960.1 competence/damage-inducible protein A Machinery gene
  AB4855_RS01550 (AB4855_001550) pgsA 320262..320840 (-) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB4855_RS01555 (AB4855_001555) - 320931..321860 (-) 930 WP_003727458.1 helix-turn-helix domain-containing protein -
  AB4855_RS01560 (AB4855_001560) ymfI 321911..322642 (-) 732 WP_003727459.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37949.98 Da        Isoelectric Point: 4.7487

>NTDB_id=1105198 AB4855_RS01540 WP_003725961.1 317631..318677(-) (recA) [Listeria monocytogenes strain Lm-CHAMPS-BD-01]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGSNKEPLDEGEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1105198 AB4855_RS01540 WP_003725961.1 317631..318677(-) (recA) [Listeria monocytogenes strain Lm-CHAMPS-BD-01]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAACATTCAGACCAAAATATATCTACTATTTCTAGTGGCTCATTAGCATTAGATATTGCTTTAGGAGTCGGCGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGGCCAGAGAGTTCCGGTAAAACAACTGTTGCACTTCATGCTATTGCGGAA
GTACAAGCACAAGGCGGAACAGCTGCATTTATCGATGCAGAACACGCACTAGATCCAGCTTATGCTAAAAACCTAGGTGT
AAATATTGATGAATTATTACTATCTCAACCTGATACAGGAGAGCAAGCATTAGAAATTGCAGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATGCTAGTAATTGACTCCGTTGCAGCACTTGTACCACGTGCTGAAATCGAAGGGGAGATGGGTGATGCA
CACGTTGGGCTACAAGCACGTTTAATGTCCCAAGCATTGCGTAAACTTTCCGGTGTTATTAATAAATCAAAAACCATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAGATTACACCTGGTGGTCGTGCGCTTA
AATTCTATTCGACTGTACGTTTAGAAGTAAGACGTGCAGAACAACTTAAGCAAGGTACAGATGTAATGGGTAACAAAACA
AAAATTAAAGTTGTAAAAAACAAAGTAGCTCCTCCATTCCGTATTGCTGAAGTGGATATCATGTACGGTGAAGGTATTTC
ACGTGAAGGCGAGCTTGTTGATATGGCCGCTGAAGTGGATGTAATCAATAAGAGTGGTTCATGGTATTCTTACAAAGAAG
AACGTATCGGCCAAGGTCGTGAAAACGCAAAACAATATCTAAAAGAACATACAGATATTCGTGATGAGATTTCAAAACGT
GTTCGTGAAGAGTACGAAATCGACGGAAGCAATAAAGAACCTTTAGATGAAGGCGAAGAAACATTAAGTTTACTAGATGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

94.253

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

77.011

100

0.77
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus mitis SK321

69.277

95.402

0.661
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae strain A1552

61.449

99.138

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.449

99.138

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.276

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Helicobacter pylori 26695

59.71

99.138

0.592
  recA Helicobacter pylori strain NCTC11637

59.71

99.138

0.592
  recA Acinetobacter baylyi ADP1

59.249

99.425

0.589
  recA Acinetobacter baumannii D1279779

59.767

98.563

0.589
  recA Ralstonia pseudosolanacearum GMI1000

66.019

88.793

0.586
  recA Pseudomonas stutzeri DSM 10701

61.398

94.54

0.58
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.954

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment