Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNHYB_RS04805 Genome accession   NZ_CP182942
Coordinates   1012367..1013506 (-) Length   379 a.a.
NCBI ID   WP_418277995.1    Uniprot ID   -
Organism   Isoptericola jiangsuensis strain DSM 21863     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1007367..1018506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHYB_RS04780 (ACNHYB_04780) - 1008344..1009123 (+) 780 WP_418277250.1 amino acid ABC transporter ATP-binding protein -
  ACNHYB_RS04785 (ACNHYB_04785) - 1009159..1009998 (+) 840 WP_418277251.1 glutamate ABC transporter substrate-binding protein -
  ACNHYB_RS04790 (ACNHYB_04790) - 1010094..1010771 (+) 678 WP_418277252.1 amino acid ABC transporter permease -
  ACNHYB_RS04795 (ACNHYB_04795) - 1010768..1011715 (+) 948 WP_418277253.1 amino acid ABC transporter permease -
  ACNHYB_RS04800 (ACNHYB_04800) - 1011759..1012355 (-) 597 WP_418277254.1 regulatory protein RecX -
  ACNHYB_RS04805 (ACNHYB_04805) recA 1012367..1013506 (-) 1140 WP_418277995.1 recombinase RecA Machinery gene
  ACNHYB_RS04810 (ACNHYB_04810) - 1013782..1014015 (-) 234 WP_418277255.1 DUF3046 domain-containing protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 39723.25 Da        Isoelectric Point: 5.8430

>NTDB_id=1103368 ACNHYB_RS04805 WP_418277995.1 1012367..1013506(-) (recA) [Isoptericola jiangsuensis strain DSM 21863]
MPAPEDREKALEAALAQIDRNFGKGSIMRLGQEGRAPVEVIPTGSIALDVALGIGGLPRGRIVEVYGPESSGKTTVALHA
VANAQKSGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTGEQALEITDMLIRSGALDIIVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGALSSSGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGTDSVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEHGFVRKSGSWFTYGGDQLGQGKENARSFLRDNPDLADEL
EKKIKEKLGVGAVLDAPAEGAEPGVAGVGADALAADATAPVAAKASTRSSAAKSKKSPF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1103368 ACNHYB_RS04805 WP_418277995.1 1012367..1013506(-) (recA) [Isoptericola jiangsuensis strain DSM 21863]
ATGCCTGCACCGGAAGACCGCGAGAAGGCCCTCGAGGCCGCGCTCGCCCAGATCGACCGCAACTTCGGCAAGGGTTCGAT
CATGCGACTCGGCCAGGAGGGGCGGGCCCCGGTCGAGGTCATCCCCACCGGCTCGATCGCCCTCGACGTGGCACTCGGCA
TCGGCGGACTGCCCCGCGGGCGCATCGTCGAGGTGTACGGCCCCGAGTCCTCCGGCAAGACGACCGTCGCCCTGCACGCG
GTGGCCAACGCCCAGAAGTCGGGCGGCATCGCCGCCTTCATCGACGCCGAGCACGCCCTGGACCCGGAGTACGCCAAGAA
GCTCGGCGTGGACACCGACGCTCTGCTCGTGTCCCAGCCGGACACCGGTGAGCAGGCCCTCGAGATCACCGACATGCTGA
TCCGCTCCGGCGCGCTGGACATCATCGTCATCGACTCGGTGGCGGCCCTGGTGCCCAAGGCGGAGATCGAGGGTGAGATG
GGCGACAGCCACGTGGGCCTGCAGGCGCGGCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGCGCGCTGAGCTCCTCGGG
GACCACGGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTCTTCTTCGGCAGCCCCGAGACGACCACGGGCGGCA
AGGCCCTGAAGTTCTACGCGTCGGTGCGCATGGACATCCGCCGGATCGAGACCCTCAAGGAGGGCACGGACTCCGTCGGC
AACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
CGGGATCTCCCGCGAGGGCGGGCTGATCGACATGGGCGTGGAGCACGGCTTCGTGCGCAAGTCCGGCTCGTGGTTCACCT
ACGGCGGCGACCAGCTCGGTCAGGGCAAGGAGAACGCACGGTCGTTCCTGCGGGACAACCCCGACCTCGCCGACGAGCTG
GAGAAGAAGATCAAGGAGAAGCTCGGGGTCGGTGCCGTGCTCGACGCGCCGGCCGAGGGTGCCGAACCGGGCGTCGCGGG
GGTCGGGGCCGACGCCCTGGCCGCGGACGCCACCGCACCCGTCGCCGCCAAGGCCTCGACCCGCTCGAGCGCGGCCAAGT
CGAAGAAGTCGCCCTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

66.975

85.488

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.975

85.488

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

66.462

85.752

0.57
  recA Pseudomonas stutzeri DSM 10701

66.258

86.016

0.57
  recA Neisseria gonorrhoeae MS11

65.443

86.28

0.565
  recA Neisseria gonorrhoeae MS11

65.443

86.28

0.565
  recA Neisseria gonorrhoeae strain FA1090

65.443

86.28

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

63.501

88.918

0.565
  recA Acinetobacter baumannii D1279779

65.741

85.488

0.562
  recA Ralstonia pseudosolanacearum GMI1000

68.051

82.586

0.562
  recA Glaesserella parasuis strain SC1401

62.611

88.918

0.557
  recA Acinetobacter baylyi ADP1

65.123

85.488

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.538

87.335

0.546
  recA Helicobacter pylori 26695

62.727

87.071

0.546
  recA Helicobacter pylori strain NCTC11637

62.727

87.071

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

86.28

0.544
  recA Lactococcus lactis subsp. cremoris KW2

62.006

86.807

0.538
  recA Streptococcus pyogenes NZ131

60.79

86.807

0.528
  recA Streptococcus mutans UA159

60.303

87.071

0.525
  recA Streptococcus pneumoniae Rx1

60.182

86.807

0.522
  recA Streptococcus pneumoniae D39

60.182

86.807

0.522
  recA Streptococcus pneumoniae R6

60.182

86.807

0.522
  recA Streptococcus pneumoniae TIGR4

60.182

86.807

0.522
  recA Streptococcus mitis NCTC 12261

60.182

86.807

0.522
  recA Streptococcus mitis SK321

59.878

86.807

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.841

86.544

0.509

Multiple sequence alignment