Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNSOL_RS05345 Genome accession   NZ_CP182894
Coordinates   1045556..1046602 (+) Length   348 a.a.
NCBI ID   WP_026804219.1    Uniprot ID   A0A366MM60
Organism   Aliarcobacter lanthieri strain BNI-4366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1040556..1051602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOL_RS05320 (ACNSOL_05320) pseG 1041409..1042320 (-) 912 WP_418181148.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -
  ACNSOL_RS05325 (ACNSOL_05325) pseF 1042317..1043018 (-) 702 WP_418181149.1 pseudaminic acid cytidylyltransferase -
  ACNSOL_RS05330 (ACNSOL_05330) pseC 1043011..1044177 (-) 1167 WP_418181150.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ACNSOL_RS05335 (ACNSOL_05335) pseB 1044174..1045166 (-) 993 WP_418181151.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACNSOL_RS05340 (ACNSOL_05340) - 1045285..1045473 (+) 189 WP_026804220.1 hypothetical protein -
  ACNSOL_RS05345 (ACNSOL_05345) recA 1045556..1046602 (+) 1047 WP_026804219.1 recombinase RecA Machinery gene
  ACNSOL_RS05350 (ACNSOL_05350) - 1046627..1047475 (-) 849 WP_418181152.1 biotin synthase -
  ACNSOL_RS05355 (ACNSOL_05355) - 1047465..1047977 (-) 513 WP_418181153.1 metallophosphoesterase family protein -
  ACNSOL_RS05360 (ACNSOL_05360) topA 1047978..1050314 (-) 2337 WP_418181154.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37311.68 Da        Isoelectric Point: 4.7387

>NTDB_id=1103250 ACNSOL_RS05345 WP_026804219.1 1045556..1046602(+) (recA) [Aliarcobacter lanthieri strain BNI-4366]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGEIVDYGVKLDIIDKAGAWFSYGDTKIGQGRENAKVFLKDNPEISKEIE
DKILNSMGINDAIITGGSDEEDTASLDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1103250 ACNSOL_RS05345 WP_026804219.1 1045556..1046602(+) (recA) [Aliarcobacter lanthieri strain BNI-4366]
ATGGATGAAAATCAAAAAAAATCACTTGAATTAGCAATAAAACAAATAGACAAAGCATTTGGAAAAGGAACTTTAATAAG
ACTTGGAGATAAAGAAGTTATTCCAACAGAAGCTATAAGTACAGGTTCTTTAGGGCTTGATTTAGCTTTAGGAGTTGGTG
GATTACCAAAAGGAAGAGTTATAGAAATATATGGACCAGAAAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCA
GAAGCCCAAAAAGCTGGTGGAGTTTGTGCTTTTATTGATGCAGAACATGCTTTAGATGTAAAATATGCAAAGGATATTGG
AGTTGATACAGATAATCTACTTGTTTCTCAACCTGATTTTGGTGAACAAGCTTTAGAAATTTTAGAAACAGTTATAAGAA
GTGGTGCAGTTGATTTAGTTGTTGTAGATTCAGTTGCAGCGCTTACTCCAAAAGTAGAAATAGATGGAGATATGGATGAT
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGTAAAGCTCTAAGAAAGGTAACTGGGCTTTTAAGTAAAATGAATTGTAC
AGTAATCTTTATCAACCAAATTAGAATGAAAATAGGAATGACAGGTTATGGAAGCCCAGAAACAACAACTGGAGGAAATG
CACTTAAATTCTATTCATCAGTAAGGCTTGATATTAGAAGAATTGCTACATTAAAACAAGGTGAAAACTCAATAGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCTGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTTGGAGAAGG
TATTTCTAAAACTGGAGAAATAGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCTGGAGCTTGGTTTAGTTATG
GTGATACAAAAATAGGTCAAGGAAGAGAAAATGCAAAAGTATTTTTAAAAGATAATCCTGAAATTTCAAAAGAGATAGAA
GATAAGATTCTTAACTCAATGGGAATAAATGATGCTATTATCACAGGTGGAAGTGATGAAGAGGATACTGCATCTTTAGA
TGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366MM60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.66

97.989

0.741
  recA Helicobacter pylori strain NCTC11637

76.347

95.977

0.733
  recA Helicobacter pylori 26695

76.048

95.977

0.73
  recA Acinetobacter baylyi ADP1

62.644

100

0.626
  recA Acinetobacter baumannii D1279779

62.899

99.138

0.624
  recA Neisseria gonorrhoeae MS11

62.974

98.563

0.621
  recA Neisseria gonorrhoeae MS11

62.974

98.563

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.974

98.563

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

94.54

0.621
  recA Pseudomonas stutzeri DSM 10701

60.231

99.713

0.601
  recA Glaesserella parasuis strain SC1401

59.544

100

0.601
  recA Vibrio cholerae strain A1552

62.424

94.828

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.424

94.828

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.81

90.517

0.578
  recA Streptococcus mitis NCTC 12261

57.061

99.713

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

60.061

94.253

0.566
  recA Streptococcus mitis SK321

56.772

99.713

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

56.484

99.713

0.563
  recA Streptococcus pyogenes NZ131

58.788

94.828

0.557
  recA Streptococcus pneumoniae TIGR4

58.61

95.115

0.557
  recA Streptococcus pneumoniae D39

58.61

95.115

0.557
  recA Streptococcus pneumoniae R6

58.61

95.115

0.557
  recA Streptococcus pneumoniae Rx1

58.61

95.115

0.557
  recA Streptococcus mutans UA159

58.61

95.115

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.54

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

93.678

0.543

Multiple sequence alignment