Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNSOS_RS07720 Genome accession   NZ_CP182882
Coordinates   1549466..1550518 (-) Length   350 a.a.
NCBI ID   WP_418184834.1    Uniprot ID   -
Organism   Aliarcobacter vitoriensis strain BNI-4100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544466..1555518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOS_RS07700 (ACNSOS_07700) - 1545106..1545612 (-) 507 WP_418184830.1 hypothetical protein -
  ACNSOS_RS07705 (ACNSOS_07705) topA 1545758..1548088 (+) 2331 WP_418184831.1 type I DNA topoisomerase -
  ACNSOS_RS07710 (ACNSOS_07710) - 1548089..1548601 (+) 513 WP_418184832.1 YfcE family phosphodiesterase -
  ACNSOS_RS07715 (ACNSOS_07715) - 1548591..1549439 (+) 849 WP_418184833.1 biotin synthase -
  ACNSOS_RS07720 (ACNSOS_07720) recA 1549466..1550518 (-) 1053 WP_418184834.1 recombinase RecA Machinery gene
  ACNSOS_RS07725 (ACNSOS_07725) - 1550614..1550802 (-) 189 WP_113908859.1 hypothetical protein -
  ACNSOS_RS07730 (ACNSOS_07730) pseB 1550911..1551903 (+) 993 WP_418184835.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACNSOS_RS07735 (ACNSOS_07735) pseC 1551900..1553030 (+) 1131 WP_418184836.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ACNSOS_RS07740 (ACNSOS_07740) pseF 1553023..1553736 (+) 714 WP_418184837.1 pseudaminic acid cytidylyltransferase -
  ACNSOS_RS07745 (ACNSOS_07745) pseG 1553738..1554655 (+) 918 WP_418184838.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37519.76 Da        Isoelectric Point: 4.6860

>NTDB_id=1103211 ACNSOS_RS07720 WP_418184834.1 1549466..1550518(-) (recA) [Aliarcobacter vitoriensis strain BNI-4100]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLSLGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGEVVDYGVKLDIIDKAGSWFSYGDTKIGQGRENAKVFLKDNPEISKEIE
DKILNSMGVNDAIITGGSDDSEEDSSSLDD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1103211 ACNSOS_RS07720 WP_418184834.1 1549466..1550518(-) (recA) [Aliarcobacter vitoriensis strain BNI-4100]
ATGGATGAAAATCAAAAAAAATCACTTGAACTTGCTATAAAACAAATAGATAAAGCTTTTGGAAAAGGAACTTTAATAAG
ACTTGGAGACAAAGAAGTTATCCCAACAGAAGCCATCAGTACAGGTTCTTTAGGACTTGATTTATCTTTAGGTGTTGGTG
GGCTTCCAAAAGGAAGAGTTATAGAGATATATGGACCAGAAAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCA
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCTTTTATTGATGCTGAACATGCTTTAGATGTAAAATATGCGAAAGATATTGG
AGTTGATACAGATAATTTACTTGTTTCTCAACCTGATTTTGGAGAACAAGCTTTAGAAATCCTTGAAACTGTTATTAGAA
GTGGTGCAGTTGATTTAGTTGTAGTTGATTCAGTTGCAGCTTTAACTCCAAAAGTAGAAATTGATGGAGATATGGATGAT
CAACAAGTTGGTGTTCAAGCAAGACTTATGAGTAAAGCTTTAAGAAAGGTAACTGGACTTTTAAGTAAAATGAATTGTAC
AGTTATTTTTATTAATCAAATAAGAATGAAAATAGGTATGACAGGATATGGAAGCCCCGAAACAACAACAGGTGGAAATG
CACTTAAATTTTACTCATCGGTAAGACTTGATATAAGAAGAATTGCAACTTTAAAACAAGGTGAAAATTCTATTGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCAGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTTGGGGAAGG
TATTTCTAAAACTGGTGAAGTAGTTGATTATGGTGTTAAACTTGATATTATTGACAAAGCTGGTTCTTGGTTTAGTTATG
GTGATACAAAAATAGGTCAAGGTAGAGAAAATGCCAAAGTATTTTTAAAAGATAATCCAGAAATTTCAAAAGAAATAGAA
GATAAAATCCTAAATTCTATGGGTGTAAATGATGCAATTATCACTGGGGGAAGTGATGACAGTGAAGAAGATAGCTCTTC
TTTAGATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

74.419

98.286

0.731
  recA Helicobacter pylori strain NCTC11637

74.052

98

0.726
  recA Helicobacter pylori 26695

73.761

98

0.723
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

94

0.614
  recA Acinetobacter baylyi ADP1

61.605

99.714

0.614
  recA Acinetobacter baumannii D1279779

63.393

96

0.609
  recA Neisseria gonorrhoeae MS11

62.099

98

0.609
  recA Neisseria gonorrhoeae MS11

62.099

98

0.609
  recA Neisseria gonorrhoeae strain FA1090

62.099

98

0.609
  recA Glaesserella parasuis strain SC1401

59.884

98.286

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.818

94.286

0.583
  recA Vibrio cholerae strain A1552

61.818

94.286

0.583
  recA Pseudomonas stutzeri DSM 10701

61.145

94.857

0.58
  recA Ralstonia pseudosolanacearum GMI1000

61.398

94

0.577
  recA Streptococcus pneumoniae TIGR4

56.286

100

0.563
  recA Streptococcus pneumoniae D39

56.286

100

0.563
  recA Streptococcus pneumoniae R6

56.286

100

0.563
  recA Streptococcus pneumoniae Rx1

56.286

100

0.563
  recA Streptococcus mutans UA159

56.447

99.714

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

59.756

93.714

0.56
  recA Streptococcus mitis NCTC 12261

58.308

94.571

0.551
  recA Streptococcus pyogenes NZ131

58.182

94.286

0.549
  recA Streptococcus mitis SK321

58.006

94.571

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

57.879

94.286

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

93.143

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.143

94

0.537

Multiple sequence alignment