Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNSOM_RS10940 Genome accession   NZ_CP182880
Coordinates   2144867..2145913 (+) Length   348 a.a.
NCBI ID   WP_026804219.1    Uniprot ID   A0A366MM60
Organism   Aliarcobacter lanthieri strain BNI-4084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2139867..2150913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOM_RS10915 (ACNSOM_10915) pseG 2140721..2141632 (-) 912 WP_418179591.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -
  ACNSOM_RS10920 (ACNSOM_10920) pseF 2141629..2142330 (-) 702 WP_418179590.1 pseudaminic acid cytidylyltransferase -
  ACNSOM_RS10925 (ACNSOM_10925) pseC 2142323..2143489 (-) 1167 WP_418179589.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ACNSOM_RS10930 (ACNSOM_10930) pseB 2143486..2144478 (-) 993 WP_026804221.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACNSOM_RS10935 (ACNSOM_10935) - 2144597..2144785 (+) 189 WP_026804220.1 hypothetical protein -
  ACNSOM_RS10940 (ACNSOM_10940) recA 2144867..2145913 (+) 1047 WP_026804219.1 recombinase RecA Machinery gene
  ACNSOM_RS10945 (ACNSOM_10945) - 2145938..2146786 (-) 849 WP_026804218.1 biotin synthase -
  ACNSOM_RS10950 (ACNSOM_10950) - 2146776..2147288 (-) 513 WP_418179588.1 metallophosphoesterase family protein -
  ACNSOM_RS10955 (ACNSOM_10955) topA 2147289..2149625 (-) 2337 WP_418179587.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37311.68 Da        Isoelectric Point: 4.7387

>NTDB_id=1103196 ACNSOM_RS10940 WP_026804219.1 2144867..2145913(+) (recA) [Aliarcobacter lanthieri strain BNI-4084]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGEIVDYGVKLDIIDKAGAWFSYGDTKIGQGRENAKVFLKDNPEISKEIE
DKILNSMGINDAIITGGSDEEDTASLDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1103196 ACNSOM_RS10940 WP_026804219.1 2144867..2145913(+) (recA) [Aliarcobacter lanthieri strain BNI-4084]
ATGGATGAAAATCAAAAAAAATCACTTGAATTAGCAATAAAACAAATAGACAAAGCATTTGGAAAAGGAACTTTAATAAG
ACTTGGGGATAAAGAAGTTATTCCAACAGAAGCAATAAGTACAGGTTCTTTAGGGCTTGATTTAGCTTTAGGAGTTGGTG
GATTGCCAAAAGGAAGAGTTATAGAGATATATGGACCAGAAAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCA
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCTTTTATTGATGCAGAACATGCTTTAGATGTAAAATATGCAAAAGATATTGG
AGTTGATACAGATAATTTACTTGTTTCTCAACCTGATTTTGGTGAACAAGCTTTAGAAATTTTAGAAACTGTTATAAGAA
GTGGGGCAGTTGATTTAGTTGTTGTAGATTCAGTTGCAGCTCTTACTCCAAAAGTAGAAATAGATGGAGATATGGATGAT
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGCAAAGCTCTAAGAAAAGTAACTGGGCTTTTAAGTAAAATGAATTGTAC
AGTAATATTTATTAACCAAATTAGAATGAAAATAGGGATGACAGGTTATGGAAGTCCAGAAACAACAACTGGAGGAAATG
CACTTAAATTCTATTCATCAGTAAGACTTGATATTAGAAGAATTGCTACATTAAAACAAGGTGAAAACTCAATAGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCTGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTTGGAGAAGG
TATCTCTAAAACTGGAGAAATAGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCTGGAGCTTGGTTTAGTTATG
GTGATACAAAAATAGGTCAAGGAAGAGAAAATGCAAAAGTATTTTTAAAAGATAACCCTGAAATTTCAAAAGAGATAGAA
GATAAGATTCTTAATTCAATGGGAATAAATGATGCTATTATCACAGGTGGAAGTGATGAAGAAGACACTGCATCTTTAGA
TGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366MM60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.66

97.989

0.741
  recA Helicobacter pylori strain NCTC11637

76.347

95.977

0.733
  recA Helicobacter pylori 26695

76.048

95.977

0.73
  recA Acinetobacter baylyi ADP1

62.644

100

0.626
  recA Acinetobacter baumannii D1279779

62.899

99.138

0.624
  recA Neisseria gonorrhoeae MS11

62.974

98.563

0.621
  recA Neisseria gonorrhoeae MS11

62.974

98.563

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.974

98.563

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

94.54

0.621
  recA Pseudomonas stutzeri DSM 10701

60.231

99.713

0.601
  recA Glaesserella parasuis strain SC1401

59.544

100

0.601
  recA Vibrio cholerae strain A1552

62.424

94.828

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.424

94.828

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.81

90.517

0.578
  recA Streptococcus mitis NCTC 12261

57.061

99.713

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

60.061

94.253

0.566
  recA Streptococcus mitis SK321

56.772

99.713

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

56.484

99.713

0.563
  recA Streptococcus pyogenes NZ131

58.788

94.828

0.557
  recA Streptococcus pneumoniae TIGR4

58.61

95.115

0.557
  recA Streptococcus pneumoniae D39

58.61

95.115

0.557
  recA Streptococcus pneumoniae R6

58.61

95.115

0.557
  recA Streptococcus pneumoniae Rx1

58.61

95.115

0.557
  recA Streptococcus mutans UA159

58.61

95.115

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.54

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

93.678

0.543

Multiple sequence alignment