Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNPWN_RS06820 Genome accession   NZ_CP182825
Coordinates   1370236..1371288 (+) Length   350 a.a.
NCBI ID   WP_119865042.1    Uniprot ID   -
Organism   Clostridium isatidis strain BK32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1365236..1376288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNPWN_RS06805 (ACNPWN_06805) - 1365636..1368008 (+) 2373 WP_418223706.1 DNA translocase FtsK 4TM domain-containing protein -
  ACNPWN_RS06810 (ACNPWN_06810) rimO 1368083..1369420 (+) 1338 WP_119865044.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACNPWN_RS06815 (ACNPWN_06815) pgsA 1369404..1369994 (+) 591 WP_119865043.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACNPWN_RS06820 (ACNPWN_06820) recA 1370236..1371288 (+) 1053 WP_119865042.1 recombinase RecA Machinery gene
  ACNPWN_RS06825 (ACNPWN_06825) rny 1371563..1373104 (+) 1542 WP_418223707.1 ribonuclease Y -
  ACNPWN_RS06830 (ACNPWN_06830) - 1373263..1373523 (+) 261 WP_009169189.1 stage V sporulation protein S -
  ACNPWN_RS06835 (ACNPWN_06835) - 1373697..1373957 (+) 261 WP_119865040.1 HPr family phosphocarrier protein -
  ACNPWN_RS06840 (ACNPWN_06840) - 1374049..1375188 (+) 1140 WP_119865039.1 DUF6398 domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37846.34 Da        Isoelectric Point: 5.9002

>NTDB_id=1102655 ACNPWN_RS06820 WP_119865042.1 1370236..1371288(+) (recA) [Clostridium isatidis strain BK32]
MGNINVDKLKAIENAMSQIEKQFGKGSVMKLGENSTLNIDTISTGCLDLDIALGIGGLPRGRIIEIFGPESSGKTTVALH
VAAEAQKQGGAVAFIDAEHALDPNYAKNLGVDIDNLIVSQPDTGEQALEITEALVRSGAIDVIVIDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGAIQKTGCIAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKTDSIKQGENII
GNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGIVQKSGAWFSCGDIRLGQGRENAKQYLKDNPELALE
IENKIREKYNLPLAKAPSVEVSEEKEKTKE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1102655 ACNPWN_RS06820 WP_119865042.1 1370236..1371288(+) (recA) [Clostridium isatidis strain BK32]
ATGGGAAATATAAATGTAGATAAGTTAAAAGCGATAGAAAATGCAATGTCACAAATTGAAAAGCAATTTGGTAAAGGTTC
AGTAATGAAATTGGGAGAAAACAGTACATTAAATATTGATACTATTTCAACGGGATGCCTTGATTTAGATATAGCTTTAG
GTATAGGTGGACTTCCAAGAGGTAGAATTATAGAAATATTTGGACCAGAAAGTTCAGGTAAGACTACTGTTGCTCTTCAT
GTTGCAGCAGAAGCTCAAAAGCAAGGAGGAGCAGTAGCATTTATAGATGCTGAACATGCTTTAGATCCAAATTATGCAAA
GAATTTAGGAGTAGATATTGATAATCTTATAGTTTCACAACCAGATACTGGAGAACAAGCGTTAGAAATTACTGAAGCCC
TAGTTAGATCTGGTGCAATTGATGTTATTGTTATTGACTCTGTTGCAGCATTAGTTCCTAGAGCTGAAATTGAAGGAGAA
ATGGGGGACTCTCATGTAGGTCTTCAAGCAAGACTTATGTCTCAAGCTTTAAGAAAGTTAACAGGTGCAATACAAAAAAC
TGGATGTATAGCTATTTTTATTAACCAATTAAGAGAAAAAGTTGGTATTATGTTTGGAAATCCTGAAACTACTACAGGAG
GAAGAGCTTTAAAATTCTATTCATCAGTTAGATTAGATGTTAGAAAAACAGATTCAATAAAACAAGGTGAAAATATTATA
GGAAACAGAACAAGAGTTAAGGTAATGAAAAATAAGGTAGCTCCTCCATTTAAACAAGCTGAATTTGATATAATGTATAA
TGAGGGAATATCAAGAACAGGTAATATTGTAGATGTTGGAGTTAAAGAAGGTATTGTACAAAAAAGCGGTGCTTGGTTCT
CTTGTGGAGATATAAGATTAGGACAAGGAAGAGAAAATGCAAAACAATATTTAAAAGATAATCCAGAATTAGCTTTAGAA
ATTGAAAATAAAATTAGAGAAAAATATAATCTTCCATTAGCTAAAGCTCCTTCAGTAGAAGTATCAGAAGAGAAAGAAAA
AACTAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.846

92.857

0.649
  recA Helicobacter pylori 26695

63.081

98.286

0.62
  recA Helicobacter pylori strain NCTC11637

62.791

98.286

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

64.865

95.143

0.617
  recA Streptococcus mutans UA159

61.782

99.429

0.614
  recA Pseudomonas stutzeri DSM 10701

63.018

96.571

0.609
  recA Neisseria gonorrhoeae MS11

66.355

91.714

0.609
  recA Neisseria gonorrhoeae MS11

66.355

91.714

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.355

91.714

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.134

94

0.603
  recA Streptococcus pyogenes NZ131

64.526

93.429

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

91.714

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

91.714

0.6
  recA Vibrio cholerae strain A1552

65.421

91.714

0.6
  recA Acinetobacter baumannii D1279779

61.765

97.143

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

94.571

0.597
  recA Glaesserella parasuis strain SC1401

64.577

91.143

0.589
  recA Acinetobacter baylyi ADP1

63.975

92

0.589
  recA Streptococcus mitis SK321

63.19

93.143

0.589
  recA Streptococcus mitis NCTC 12261

63.19

93.143

0.589
  recA Streptococcus pneumoniae Rx1

63.19

93.143

0.589
  recA Streptococcus pneumoniae D39

63.19

93.143

0.589
  recA Streptococcus pneumoniae R6

63.19

93.143

0.589
  recA Streptococcus pneumoniae TIGR4

63.19

93.143

0.589
  recA Lactococcus lactis subsp. cremoris KW2

62.577

93.143

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.429

0.566

Multiple sequence alignment