Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D3W47_RS02590 Genome accession   NZ_CP182821
Coordinates   496907..497971 (-) Length   354 a.a.
NCBI ID   WP_119672908.1    Uniprot ID   -
Organism   Deinococcus sp. RM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 491907..502971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W47_RS02565 (D3W47_002565) - 492461..492853 (-) 393 WP_119672904.1 Fur family transcriptional regulator -
  D3W47_RS02570 (D3W47_002570) - 493127..494047 (+) 921 WP_119672905.1 biotin--[acetyl-CoA-carboxylase] ligase -
  D3W47_RS02575 (D3W47_002575) - 494080..494664 (+) 585 WP_119672906.1 biotin transporter BioY -
  D3W47_RS02580 (D3W47_002580) - 494977..495786 (+) 810 WP_147363285.1 transposase -
  D3W47_RS02585 (D3W47_002585) - 496155..496856 (+) 702 WP_147363286.1 hypothetical protein -
  D3W47_RS02590 (D3W47_002590) recA 496907..497971 (-) 1065 WP_119672908.1 recombinase RecA Machinery gene
  D3W47_RS02595 (D3W47_002595) thpR 497968..498693 (-) 726 WP_119672909.1 RNA 2',3'-cyclic phosphodiesterase -
  D3W47_RS02600 (D3W47_002600) - 498690..499901 (-) 1212 WP_418514516.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  D3W47_RS02605 (D3W47_002605) - 500007..500336 (-) 330 WP_119672893.1 four-helix bundle copper-binding protein -
  D3W47_RS02610 (D3W47_002610) - 500595..500921 (-) 327 WP_119672894.1 hypothetical protein -
  D3W47_RS02615 (D3W47_002615) ilvA 501006..502514 (-) 1509 WP_119672895.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37569.28 Da        Isoelectric Point: 5.6324

>NTDB_id=1102630 D3W47_RS02590 WP_119672908.1 496907..497971(-) (recA) [Deinococcus sp. RM]
MSKEKDIAATPTDAKERAKAIETAMSQIEKAFGKGSIMKLGAESKLDVQAVSTGSLSLDLALGVGGVPKGRITEIYGPES
GGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAVDVVVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG
QPVKMGNDAIGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMEIIKKAGSFYSYNDERIGQGKEKAIAY
ISERPEMEAEIRTRVLGAIKEGRDPLAAVPTVAE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1102630 D3W47_RS02590 WP_119672908.1 496907..497971(-) (recA) [Deinococcus sp. RM]
ATGAGCAAAGAAAAAGACATCGCCGCCACCCCCACCGACGCCAAGGAACGCGCCAAGGCCATCGAGACCGCCATGAGCCA
GATCGAGAAGGCCTTCGGCAAGGGCAGCATCATGAAGCTCGGCGCCGAGAGCAAACTCGACGTGCAGGCCGTCAGCACCG
GCAGCCTCAGCCTGGACCTCGCGCTGGGCGTGGGCGGCGTGCCCAAGGGCCGCATCACCGAGATCTACGGCCCGGAATCC
GGCGGCAAGACCACCCTGGCGCTGGCCATCGTCGCGCAGGCCCAGAAGGCCGGCGGCACCTGCGCGTTCATCGACGCCGA
GCACGCCCTGGACCCCGTGTACGCCCGCGCGCTGGGCGTGAACACCGACGAACTGCTCGTCTCGCAGCCGGACAACGGCG
AGCAGGCGCTGGAGATCATGGAACTCCTCGTGCGCAGCGGCGCGGTGGACGTCGTCGTCGTGGACTCCGTGGCCGCCCTG
ACGCCCCGCGCGGAAATCGAGGGCGAGATGGGCGACAGCCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCG
CAAACTCACCGCGATCCTCAGCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTCCGCGAGAAGATCGGCGTGATGT
ACGGCAACCCCGAAACCACCACCGGCGGCCGCGCCCTGAAGTTCTACGCCAGCGTGCGCCTGGACGTCCGCAAGATCGGC
CAGCCCGTCAAGATGGGCAACGACGCCATCGGCAACACCGTCAAGGTCAAGACCGTGAAGAACAAGGTCGCGCCGCCCTT
CAAGGAAGTCGAACTGACCCTGATGTACGGCAAGGGCTTCGACCAGCTCAGTGACCTCGTGACGCTCGCCAGCGACATGG
AGATCATCAAGAAGGCCGGATCGTTCTACTCCTACAACGACGAACGCATCGGCCAGGGCAAGGAAAAAGCCATCGCGTAC
ATCAGTGAACGCCCCGAGATGGAAGCCGAGATCCGCACCCGCGTCCTCGGCGCGATCAAGGAAGGCCGCGACCCGCTGGC
CGCCGTGCCCACCGTCGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

90.698

97.175

0.881
  recA Streptococcus mitis SK321

61.823

99.153

0.613
  recA Glaesserella parasuis strain SC1401

63.988

94.915

0.607
  recA Acinetobacter baylyi ADP1

65.123

91.525

0.596
  recA Streptococcus pneumoniae TIGR4

65.015

91.243

0.593
  recA Streptococcus pneumoniae D39

65.015

91.243

0.593
  recA Streptococcus pneumoniae R6

65.015

91.243

0.593
  recA Streptococcus pneumoniae Rx1

65.015

91.243

0.593
  recA Streptococcus mitis NCTC 12261

64.706

91.243

0.59
  recA Acinetobacter baumannii D1279779

64.11

92.09

0.59
  recA Streptococcus pyogenes NZ131

63.467

91.243

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

60.417

94.915

0.573
  recA Streptococcus mutans UA159

62.848

91.243

0.573
  recA Ralstonia pseudosolanacearum GMI1000

61.162

92.373

0.565
  recA Vibrio cholerae strain A1552

63.259

88.418

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.259

88.418

0.559
  recA Lactococcus lactis subsp. cremoris KW2

60.736

92.09

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.25

90.395

0.554
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.076

89.266

0.545
  recA Neisseria gonorrhoeae strain FA1090

59.443

91.243

0.542
  recA Neisseria gonorrhoeae MS11

59.443

91.243

0.542
  recA Neisseria gonorrhoeae MS11

59.443

91.243

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.402

93.503

0.537
  recA Pseudomonas stutzeri DSM 10701

57.975

92.09

0.534
  recA Helicobacter pylori strain NCTC11637

58.385

90.96

0.531
  recA Helicobacter pylori 26695

58.075

90.96

0.528

Multiple sequence alignment