Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNOGP_RS19705 Genome accession   NZ_CP182814
Coordinates   4990008..4991042 (+) Length   344 a.a.
NCBI ID   WP_418213527.1    Uniprot ID   -
Organism   Bacteroides difficilis strain 17-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4985008..4996042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNOGP_RS19685 (ACNOGP_19685) dnaK 4985096..4987009 (-) 1914 WP_272719485.1 molecular chaperone DnaK -
  ACNOGP_RS19690 (ACNOGP_19690) - 4987341..4988129 (-) 789 WP_007758773.1 META domain-containing protein -
  ACNOGP_RS19695 (ACNOGP_19695) - 4988303..4989496 (+) 1194 WP_007758772.1 saccharopine dehydrogenase family protein -
  ACNOGP_RS19700 (ACNOGP_19700) bcp 4989529..4989984 (+) 456 WP_418213526.1 thioredoxin-dependent thiol peroxidase -
  ACNOGP_RS19705 (ACNOGP_19705) recA 4990008..4991042 (+) 1035 WP_418213527.1 recombinase RecA Machinery gene
  ACNOGP_RS19710 (ACNOGP_19710) - 4991189..4992184 (-) 996 WP_007756046.1 YeiH family protein -
  ACNOGP_RS19715 (ACNOGP_19715) - 4992427..4993155 (-) 729 WP_418213528.1 Fic family protein -
  ACNOGP_RS19720 (ACNOGP_19720) - 4993703..4994338 (+) 636 WP_007758767.1 HU family DNA-binding protein -
  ACNOGP_RS19725 (ACNOGP_19725) - 4994668..4995654 (+) 987 WP_195477624.1 IS30 family transposase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37214.64 Da        Isoelectric Point: 5.2016

>NTDB_id=1102524 ACNOGP_RS19705 WP_418213527.1 4990008..4991042(+) (recA) [Bacteroides difficilis strain 17-4]
MAKKDELNFETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDSVEQVEVIPTGSIALNVALGVGGYPRGRIIEIYG
PESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNGEQALEIAEQLIRSSAIDIIVIDSV
AALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIR
PGQPIKDGEEILGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIVDLGADLGIIKKSGSWYSYNDTKLGQGRDAAK
QCIADNPELTEELEGLIFEELKKK

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1102524 ACNOGP_RS19705 WP_418213527.1 4990008..4991042(+) (recA) [Bacteroides difficilis strain 17-4]
ATGGCAAAGAAAGACGAACTTAATTTTGAAACAGATAATAAAATGGCATCAAGCGAAAAACTAAAAGCCTTACAGGCAGC
CATGGAAAAGATAGAAAAGAGCTTCGGTAAAGGTTCTATCATGAAAATGGGTGACGACAGTGTTGAACAAGTAGAAGTGA
TCCCGACAGGCTCCATAGCCTTGAACGTGGCACTTGGCGTGGGAGGTTACCCAAGAGGTAGAATCATCGAAATTTATGGT
CCGGAATCTTCCGGTAAAACGACATTGGCCATTCATGCCATTGCCGAAGCACAAAAGGCTGGCGGTATAGCAGCTTTCAT
TGATGCAGAACATGCTTTCGACCGTTTCTATGCATCTAAACTAGGTGTAAACATCGATGACCTGTACATCTCCCAGCCGG
ACAACGGAGAGCAGGCATTGGAAATTGCAGAACAACTGATCCGTTCTTCTGCTATCGACATTATCGTAATCGACTCCGTT
GCCGCATTGACTCCTAAAGCTGAAATTGAAGGTGACATGGGTGACAACAAAGTAGGTCTTCAGGCACGTTTGATGTCTCA
GGCATTACGTAAGTTGACAGCAGCAGTCAGCAAGACACGTACAACTTGTATCTTTATCAATCAGTTGCGTGAGAAGATCG
GTGTAATGTTCGGCAGTCCGGAAACAACTACCGGTGGTAATGCCTTAAAATTCTACGCATCCGTACGTTTGGATATCCGT
CCGGGACAACCGATCAAAGATGGTGAAGAGATTCTGGGCAAACTGACTAAAGTAAAAGTCGTGAAGAATAAAGTGGCTCC
TCCTTTCCGGAGAGCAGAATTTGATATCATGTTCGGTGAAGGTATCTCCCATTCCGGAGAAATCGTTGACTTGGGTGCCG
ATCTGGGAATCATCAAGAAAAGCGGTTCATGGTATAGTTACAACGACACGAAGCTGGGACAGGGACGCGACGCCGCCAAA
CAATGTATTGCCGACAATCCGGAACTTACAGAAGAGCTGGAAGGACTGATCTTTGAAGAGTTAAAGAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.915

99.128

0.683
  recA Ralstonia pseudosolanacearum GMI1000

66.769

94.477

0.631
  recA Neisseria gonorrhoeae MS11

66.46

93.605

0.622
  recA Neisseria gonorrhoeae MS11

66.46

93.605

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.46

93.605

0.622
  recA Streptococcus mitis SK321

62.426

98.256

0.613
  recA Streptococcus mitis NCTC 12261

62.426

98.256

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.984

91.57

0.613
  recA Streptococcus pneumoniae R6

62.13

98.256

0.61
  recA Streptococcus pneumoniae Rx1

62.13

98.256

0.61
  recA Streptococcus pneumoniae D39

62.13

98.256

0.61
  recA Streptococcus pneumoniae TIGR4

62.13

98.256

0.61
  recA Glaesserella parasuis strain SC1401

62.651

96.512

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

90.698

0.605
  recA Streptococcus pyogenes NZ131

61.538

98.256

0.605
  recA Streptococcus mutans UA159

60.947

98.256

0.599
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.651

98.256

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.651

98.256

0.596
  recA Acinetobacter baylyi ADP1

62.769

94.477

0.593
  recA Acinetobacter baumannii D1279779

63.043

93.605

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

62.696

92.733

0.581
  recA Helicobacter pylori strain NCTC11637

63.291

91.86

0.581
  recA Helicobacter pylori 26695

63.291

91.86

0.581
  recA Pseudomonas stutzeri DSM 10701

61.801

93.605

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

93.605

0.573
  recA Vibrio cholerae strain A1552

61.18

93.605

0.573

Multiple sequence alignment