Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNOJ3_RS17645 Genome accession   NZ_CP182813
Coordinates   4224086..4225111 (-) Length   341 a.a.
NCBI ID   WP_223584554.1    Uniprot ID   -
Organism   Sphingobacterium detergens strain MGMM185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4219086..4230111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNOJ3_RS17625 msrA 4219430..4220083 (+) 654 WP_223584550.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACNOJ3_RS17630 pruA 4220174..4221811 (+) 1638 WP_223584551.1 L-glutamate gamma-semialdehyde dehydrogenase -
  ACNOJ3_RS17635 - 4221927..4223108 (-) 1182 WP_223584552.1 metallophosphoesterase family protein -
  ACNOJ3_RS17640 - 4223115..4223882 (-) 768 WP_223584553.1 endonuclease/exonuclease/phosphatase family protein -
  ACNOJ3_RS17645 recA 4224086..4225111 (-) 1026 WP_223584554.1 recombinase RecA Machinery gene
  ACNOJ3_RS17650 nth 4225179..4225856 (-) 678 WP_223584604.1 endonuclease III -
  ACNOJ3_RS17655 - 4226073..4226264 (-) 192 WP_147420472.1 hypothetical protein -
  ACNOJ3_RS17660 - 4226348..4227973 (-) 1626 WP_418359372.1 S8 family peptidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36783.27 Da        Isoelectric Point: 4.9666

>NTDB_id=1102517 ACNOJ3_RS17645 WP_223584554.1 4224086..4225111(-) (recA) [Sphingobacterium detergens strain MGMM185]
MSNTDKLKALQLTLDKLEKNFGKGSIMKLGDTAVEPIEAISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQPDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIIFGEGISKVGEIIDLGVEYGIIKKAGSWFSYGETKLGQGRDAVKALLFDNPDLMDELE
AKIRTEVTGEDPMLHVEENKD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1102517 ACNOJ3_RS17645 WP_223584554.1 4224086..4225111(-) (recA) [Sphingobacterium detergens strain MGMM185]
ATGAGCAACACAGATAAATTAAAAGCGTTACAGCTGACGTTAGATAAATTGGAAAAGAACTTTGGAAAAGGTTCGATTAT
GAAATTAGGAGATACAGCTGTTGAGCCTATCGAGGCGATTTCTACAGGATCCTTAGGTCTGGATATTGCTTTAGGAATTG
GCGGTGTTCCAAAAGGGCGTATCATTGAAATATATGGACCTGAATCTTCGGGTAAAACGACATTAGCAACACACATTGTT
GCTGAAGCACAGAAAAAAGGCGGTATTGCAGCAATTATTGATGCGGAACACGCTTTTGATAAATATTATGCACAAAAGCT
AGGTGTTGATGTTGAGAACTTATTAATTTCTCAGCCAGATAATGGTGAACAAGGTTTAGAAATTGCGGACAATTTAATTC
GCTCAGGTGCCATTGATGTTATTGTAATTGACTCTGTAGCTGCATTAGTACCTAAAGGTGAGATTGAAGGTGAAATGGGT
GATTCAAAAATGGGTCTTCAAGCCCGTTTAATGTCTCAAGCATTACGTAAATTGACCGGAACAATTTCCAAAACAAACTG
TTGTTGTATTTTCATCAACCAATTACGTGAAAAAATTGGTGTGATGTTCGGTAACCCAGAAACAACAACTGGTGGTAACG
CATTGAAGTTCTATGCTTCTGTACGTTTGGATATCCGTCGTACATCACAGATTAAAGATTCTGACGAGGTATCTGGTAAC
CGTGTAAAAGTTAAAATTGTAAAAAATAAAGTAGCACCTCCTTTCCGTATTGCGGAGTTTGATATCATCTTTGGTGAAGG
TATCTCAAAAGTCGGTGAAATCATTGACTTAGGTGTTGAATATGGCATCATCAAAAAAGCGGGTTCATGGTTTAGCTATG
GTGAAACCAAATTAGGACAAGGTAGAGATGCTGTAAAAGCCCTATTGTTTGACAATCCAGATCTAATGGATGAACTTGAG
GCAAAAATCCGTACTGAAGTAACAGGAGAAGATCCAATGCTTCATGTAGAGGAAAATAAAGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.646

96.188

0.689
  recA Ralstonia pseudosolanacearum GMI1000

69.085

92.962

0.642
  recA Neisseria gonorrhoeae MS11

66.978

94.135

0.63
  recA Neisseria gonorrhoeae MS11

66.978

94.135

0.63
  recA Neisseria gonorrhoeae strain FA1090

66.978

94.135

0.63
  recA Helicobacter pylori strain NCTC11637

65.031

95.601

0.622
  recA Glaesserella parasuis strain SC1401

65.938

93.842

0.619
  recA Acinetobacter baumannii D1279779

62.242

99.413

0.619
  recA Helicobacter pylori 26695

64.724

95.601

0.619
  recA Acinetobacter baylyi ADP1

65.015

94.721

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

94.135

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.601

0.61
  recA Pseudomonas stutzeri DSM 10701

63.467

94.721

0.601
  recA Streptococcus pneumoniae D39

59.302

100

0.598
  recA Streptococcus pneumoniae TIGR4

59.302

100

0.598
  recA Streptococcus pneumoniae R6

59.302

100

0.598
  recA Streptococcus pneumoniae Rx1

59.302

100

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.18

97.947

0.589
  recA Vibrio cholerae strain A1552

60.18

97.947

0.589
  recA Streptococcus mitis NCTC 12261

61.162

95.894

0.587
  recA Streptococcus pyogenes NZ131

61.043

95.601

0.584
  recA Streptococcus mitis SK321

60.856

95.894

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.491

94.428

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

61.111

95.015

0.581
  recA Streptococcus mutans UA159

59.816

95.601

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.125

93.842

0.545

Multiple sequence alignment